JCEG ID JCEG224
Name gly-11      WormBase    NCBI Gene
Human Ortholog

GGDB:GALNT11 

OMIM: 615130 615133

OrthoList :   GALNT11   GALNTL5  (Ensembl Compara)

GGDB Score E-val
GALNT11 420 e-119
GALNT2 337 3e-94
GALNT1 330 4e-92
GALNT13 326 6e-91
GALNT14 325 2e-90
GALNT5 307 3e-85
GALNT10 304 3e-84
GALNT4 301 2e-83
GALNT12 300 4e-83
GALNT6 290 4e-80
GALNT3 290 6e-80
GALNT9 278 1e-76
GALNT15 263 9e-72
GALNT7 252 1e-68
GALNT8 251 2e-68
GALNT19 246 7e-67
Option tblastn : Query Worm Protein, Subject GGDB mRNA, E-val < 0.00001
Family Name ppGalNAcT
Locus Tag Y75B8A.9
RNAi phenotype
phenotype WT
Microscope observation (Image)
COPAS (Image)

Normal

hsp-4::GFP (Image)
Sequence Features
Sequence CDS
Protein
References

Wang H, Spang A, Sullivan MA, Hryhorenko J, Hagen FK Mol. Biol. Cell (2005) 16 (9) :4202-13 [PMID : 15987734] The terminal phase of cytokinesis in the Caenorhabditis elegans early embryo requires protein glycosylation.

Berninsone PM WormBook (2006) :1-22 [PMID : 18050430] Carbohydrates and glycosylation.

Chen JR, Chang BH, Allen JE, Stiffler MA, MacBeath G Nat. Biotechnol. (2008) 26 (9) :1041-5 [PMID : 18711339] Predicting PDZ domain-peptide interactions from primary sequences.

Shaye DD, Greenwald I PLoS ONE (2011) 6 (5) :e20085 [PMID : 21647448] OrthoList: a compendium of C. elegans genes with human orthologs.

Bennett EP, Mandel U, Clausen H, Gerken TA, Fritz TA, Tabak LA Glycobiology (2012) 22 (6) :736-56 [PMID : 22183981] Control of mucin-type O-glycosylation: a classification of the polypeptide GalNAc-transferase gene family.

WormBase (WS254)

Functional Descriptions gly-11
Deletion Mutants gk342
In Situ In Situ   
Expression Expression
db_name wbbt name def reliability expr_pattern paper WormAtlas
WB WBbt:0003707

mc3 "marginal cell, type 3." [WB:rynl] Certain WB:Expr11324 WBPaper00044287
WB WBbt:0003709

mc1 "marginal cell, type 1." [WB:rynl] Certain WB:Expr11324 WBPaper00044287
WB WBbt:0003721

pm7 "seventh pharyngeal muscle cell layer" [WB:rynl] Certain WB:Expr11324 WBPaper00044287 WormAtlas
WB WBbt:0003724

pm6 "sixth pharyngeal muscle cell layer" [WB:rynl] Certain WB:Expr11324 WBPaper00044287 WormAtlas
WB WBbt:0003739

pm4 "fourth pharyngeal muscle cell layer" [WB:rynl] Certain WB:Expr11324 WBPaper00044287 WormAtlas
WB WBbt:0003740

pm3 "third pharyngeal muscle cell layer" [WB:rynl] Certain WB:Expr11324 WBPaper00044287 WormAtlas
WB WBbt:0004302

pm8 "eighth pharyngeal muscle cell layer (single cell)" [ISBN:0-87969-307-X] Certain WB:Expr11324 WBPaper00044287 WormAtlas
WB WBbt:0005733

hypodermis "epidermal layer" [WB:pws] Certain WB:Expr11324 WBPaper00044287
WB WBbt:0005772

intestine "A chain of very large cuboidal cells forming a wide central lumen in which food arrives from the posterior pharynx, is digested, and from which waste products proceed to the rectum. Intestinal rings form in groups of two and four cells surrounding the common lumen; thus the epithelium is only one cell deep at any point, with neighboring cells firmly secured to their neighbors by apical adherens junctions. These cells have very large nuclei and many large vacuoles, yolk granules, and other inclusions; the latter increase in number and electron density as the animal ages." [WBPaper:00038216] Enriched WBPaper00029359 WormAtlas
WB WBbt:0005812

excretory cell "H-shaped cell associated with the excretory system, largest cell in C. elegans." [WB:rynl] Certain WB:Expr11324 WBPaper00044287 WormAtlas
WB WBbt:0006831

PVD "Neuron class of two interneurons with cell bodies situated laterally in the posterior body." [WB:Paper00000938] Enriched WBPaper00036375 : enriched_in_PVD_OLL
 WBPaper00036375
WB WBbt:0006847

OLL "Neuron class of two neurons with ciliated endings in the lateral outer labial sensilla." [WB:Paper00000938] Enriched WBPaper00036375 : enriched_in_PVD_OLL
 WBPaper00036375

WBGene00001636
Phenotype
Homology_paralog
Observed Observed and NOT Observed
Phenotype Definition RNAi / Allele


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