JCGG-STR020897:JCGGDB ID

JCGGDB Glycan Structure Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology (AIST)

Glycan Information

Glyco Tree get Image

Composition

Hex 3 HexNAc 5 dHex 1
Mass Value Search

Fuc 1 GlcNAc 5 Man 3
Structural Isomer Search

Descriptors Computed from Structure

InChIKey	LGIFPLOCVVLNMS-HNHLYWLCSA-N
InChI	InChI=1S/C64H107N5O45/c1-15-34(81)45(92)48(95)61(100-15)98-13-27-51(43(90)29(56(97)101-27)65-16(2)76)109-60-33(69-20(6)80)44(91)50(26(12-75)107-60)110-62-49(96)53(112-64-55(47(94)39(86)25(11-74)106-64)114-59-32(68-19(5)79)42(89)37(84)23(9-72)104-59)52(111-57-30(66-17(3)77)40(87)35(82)21(7-70)102-57)28(108-62)14-99-63-54(46(93)38(85)24(10-73)105-63)113-58-31(67-18(4)78)41(88)36(83)22(8-71)103-58/h15,21-64,70-75,81-97H,7-14H2,1-6H3,(H,65,76)(H,66,77)(H,67,78)(H,68,79)(H,69,80)/t15-,21+,22+,23+,24+,25+,26+,27+,28+,29+,30+,31+,32+,33+,34+,35+,36+,37+,38+,39+,40+,41+,42+,43+,44+,45+,46-,47-,48-,49-,50+,51+,52+,53+,54-,55-,56+,57-,58-,59-,60-,61+,62-,63-,64+/m0/s
SMILES	C[C@@H]1O[C@@H](OC[C@H]2O[C@@H](O)[C@H](NC(C)=O)[C@@H](O)[C@@H]2O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4NC(C)=O)[C@@H](O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4NC(C)=O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4NC(C)=O)[C@@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@@H](O)[C@H](O)[C@@H]1O

Mass

	Monoisotopic Mass	Average Mass
Underivatised Oligosaccharides	1665.6238	1666.5604
Permethylated Oligosaccharides	2058.062	2059.3127
Peracetylated Oligosaccharides	2631.8667	2633.4175

Glycan Motifs

Motif ID	Structure / SubStructure Name	Note
JCGG-MOTIF1004	Core fucose, bisecting GlcNAc and N-glycan core structure	Reducing Terminal

External Links

GMDB (MSⁿ)

GMDB ONA-0000a7 ONA-0000a7

JCGG	JCGG JGD-000854 JGD-000854

GlycomeDB (Structure)

GlycomeDB 2972 2972

KEGG (Structure)

KEGG G10687 G10687

SGCAL (Mass Identification)

SGCAL NG-030 NG-030

Description: GlcNAcb1-2Mana1-6(GlcNAcb1-4)(GlcNAcb1-2Mana1-3)Manb1-4GlcNAcb1-4(Fuca1-6)GlcNAc

CarbBank

CCSD : 1708

Title : Control of Glycoprotein synthesis. UDP-GlcNAc:glycopeptide .beta.4-N- Acetylglucosaminyltransferase III, an enzyme in hen oviduct which adds GlcNAc in .beta.1-4 linkage to the .beta.-linked mannose of the trimannosyl core of N-glycosyl oligosaccharides

Authors : Narasimhan S

Info : J Biol Chem (1982) 257: 10235-10242

Other Data : 2010-12-17

CCSD : 7802

Title : Control of glycoprotein synthesis. Bovine milk UDPgalactose:N- acetylglucosamine 4-.beta.-galactosyltransferase catalyzes the preferential transfer of galactose to the GlcNAc.beta.1,2Man.alpha.1,3-branch of both bisected and nonbisected complex biantennary asparagine-linked oligosaccharides

Authors : Narasimhan S; Freed JC; Schachter H

Info : Biochemistry (1985) 24: 1694-1700

Other Data : 2010-12-17

CCSD : 29171

Title : A subclass of cell surface carbohydrates revealed by a CHO mutant with two glycosylation mutations

Authors : Stanley P; Sundaram S; Sallustio S

Info : Glycobiology (1991) 1: 307-314

TAXID : 11276 Other Data : 2010-12-17

CCSD : 30813

Title : Structures of asparagine linked oligosaccharides of immunoglobulins

Authors : Matsuura F; Ohta M; Murakami K; Matsuki Y

Info : Glycoconj J (1993) 10: 202-213

TAXID : 93934 Other Data : egg yolk Other Data : 2010-12-17

CCSD : 42690

Title : First evidence of human meconium glycoasparagines

Authors : Cuvillier O; Alonso C; Wieruszeski JM; Brassart C; Strecker G; Bouquelet S; Michalski JC

Info : Glycobiology (1995) 5: 281-289

TAXID : 9606 Genus Species : man Scientific Name : Homo sapiens Other Data : meconium Other Data : 2010-12-17

CCSD : 45822

Title : Control of branching during the biosynthesis of asparagine-linked oligosaccharides

Authors : Schachter H; Narasimhan S; Gleeson P; Vella G

Info : Can J Biochem Cell Biol (1983) 61: 1049-1066

Other Data : 2010-12-17

JCGGDB ID JCGG-STR020897

Glycan Information

External Links