JCGG-STR016131:JCGGDB ID

JCGGDB Glycan Structure Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology (AIST)

Glycan Information

Glyco Tree get Image

Composition

Hex 6 HexNAc 5
Mass Value Search

Gal 3 GlcNAc 5 Man 3
Structural Isomer Search

Descriptors Computed from Structure

InChIKey	RDRATMAABXASQV-KBTMZASGSA-N
InChI	InChI=1S/C76H127N5O56/c1-17(91)77-33-44(102)58(26(10-86)119-66(33)116)130-68-35(79-19(3)93)46(104)62(30(14-90)125-68)134-74-57(115)63(135-76-65(52(110)41(99)25(9-85)123-76)137-70-37(81-21(5)95)48(106)61(29(13-89)127-70)133-73-56(114)51(109)40(98)24(8-84)122-73)43(101)32(128-74)16-118-75-64(136-69-36(80-20(4)94)47(105)60(28(12-88)126-69)132-72-55(113)50(108)39(97)23(7-83)121-72)53(111)42(100)31(129-75)15-117-67-34(78-18(2)92)45(103)59(27(11-87)124-67)131-71-54(112)49(107)38(96)22(6-82)120-71/h22-76,82-90,96-116H,6-16H2,1-5H3,(H,77,91)(H,78,92)(H,79,93)(H,80,94)(H,81,95)/t22-,23-,24-,25-,26-,27-,28-,29-,30-,31-,32-,33-,34-,35-,36-,37-,38+,39+,40+,41-,42-,43-,44-,45-,46-,47-,48-,49+,50+,51+,52+,53+,54-,55-,56-,57+,58-,59-,60-,61-,62-,63+,64+,65+,66-,67-,68+,69+,70+,71+,72+,73+,74+,75+,76-/m1/s
SMILES	CC(=O)N[C@H]1[C@H](O)O[C@H](CO)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@H](O)[C@H](O)[C@H]5O)[C@H](O)[C@H]4NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@H](O)[C@H](O)[C@H]5O)[C@H](O)[C@H]4NC(C)=O)[C@@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@@H]1O

Mass

	Monoisotopic Mass	Average Mass
Underivatised Oligosaccharides	2005.7242	2006.8446
Permethylated Oligosaccharides	2496.2722	2497.7849
Peracetylated Oligosaccharides	3266.0413	3267.9624

Glycan Motifs

Motif ID	Structure / SubStructure Name	Note
JCGG-MOTIF1001	N-glycan core structure	Reducing Terminal
JCGG-MOTIF4091	Terminal N-Acetyllactosamine	NON-Reducing Terminal

External Links

JCGG	JCGG JGD-000840 JGD-000840

MDHPLCDB (HPLCⁿ)

MDHPLCDB 300.18 300.18

GlycomeDB (Structure)

GlycomeDB 2500 2500

KEGG (Structure)

KEGG G10757 G10757

SGCAL (Mass Identification)

SGCAL NG-071 NG-071

Description: [Gal-GlcNAc]3Man3[GlcNAc]2

CarbBank

CCSD : 4418

Title : Binding of N-linked bovine fetuin glycopeptides to isolated rabbit hepatocytes: Gal/GalNAc hepatic lectin discrimination between Gal.beta.(1, 4)GlcNAc and Gal.beta.(1,3)GlcNAc in a triantennary structure

Authors : Townsend RR; Hardy MR; Wong TC; Lee YC

Info : Biochemistry (1986) 25: 5716-5725

TAXID : 9913 Other Data : 2010-12-17

CCSD : 7095

Title : Glycosylation of chicken haptoglobin: isolation and characterization of three molecular variants and studies of their distribution in hen plasma before and after turpentine-induced inflammation

Authors : Delers F; Strecker G; Engler R

Info : Biochem Cell Biol (1988) 66: 208-217

TAXID : 9031 Other Data : plasma Other Data : 2010-12-17

CCSD : 12345

Title : Comparison and partial characterization of guinea pig Ia .alpha.-and .beta.- chain oligosaccharides

Authors : Quill H; Schwartz BD

Info : J Immunol (1984) 132: 289-296

TAXID : 10141 Other Data : 2010-12-17

CCSD : 22539

Title : Novel transferrins useful as markers for liver cancer diagnosis

Authors : Kobata A; Yamashita K

Info : Jpn Kokai Tokkyo Koho (1990) : 1-12

Other Data : 2010-12-17

CCSD : 30108

Title : Structural analysis of the oligosaccharides of DR1 and DQw1 molecules

Authors : Iturbe S; Narasimhan S; Letarte M

Info : J Immunol (1986) 136: 4596-4603

TAXID : 9606 Genus Species : man Scientific Name : Homo sapiens Other Data : 2010-12-17

CCSD : 37034

Title : Immune response against human immunodeficiency virus envelope glycoprotein: does glycosylation act as a shield or an Achille's heel?

Authors : Benjouad A; Fenouillet E

Info : Medicine-Science (1994) 10: 544-550

TAXID : 57667 Other Data : envelope glycoprotein Other Data : 2010-12-17

JCGGDB ID JCGG-STR016131

Glycan Information

External Links