JCGG-STR014874:JCGGDB ID

JCGGDB Glycan Structure Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology (AIST)

Glycan Information

Glyco Tree get Image

Composition

Hex 5 HexNAc 4 Neu5Ac 2
Mass Value Search

Gal 2 GlcNAc 4 Man 3 Neu5Ac 2
Structural Isomer Search

Descriptors Computed from Structure

InChIKey	RDUPXSKIKTZZLY-UGECALQMSA-N
InChI	InChI=1S/C84H138N6O62/c1-20(101)85-39-26(107)7-83(81(128)129,149-65(39)45(111)28(109)9-91)151-68-49(115)32(13-95)134-77(59(68)125)144-63-36(17-99)139-74(43(54(63)120)89-24(5)105)147-70-56(122)47(113)30(11-93)136-79(70)132-19-38-51(117)67(58(124)76(141-38)143-62-35(16-98)138-73(42(53(62)119)88-23(4)104)142-61-34(15-97)133-72(127)41(52(61)118)87-22(3)103)146-80-71(57(123)48(114)31(12-94)137-80)148-75-44(90-25(6)106)55(121)64(37(18-100)140-75)145-78-60(126)69(50(116)33(14-96)135-78)152-84(82(130)131)8-27(108)40(86-21(2)102)66(150-84)46(112)29(110)10-92/h26-80,91-100,107-127H,7-19H2,1-6H3,(H,85,101)(H,86,102)(H,87,103)(H,88,104)(H,89,105)(H,90,106)(H,128,129)(H,130,131)/t26-,27-,28+,29+,30+,31+,32+,33+,34+,35+,36+,37+,38+,39+,40+,41+,42+,43+,44+,45+,46+,47+,48+,49-,50-,51+,52+,53+,54+,55+,56-,57-,58-,59+,60+,61+,62+,63+,64+,65+,66+,67-,68-,69-,70-,71-,72+,73-,74-,75-,76-,77-,78-,79-,80+,83-,84-/m0/s
SMILES	CC(=O)N[C@H]1[C@H](O)O[C@H](CO)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@H](O)[C@H](O[C@@]6(C[C@H](O)[C@@H](NC(C)=O)[C@@H](O6)[C@H](O)[C@H](O)CO)C(O)=O)[C@H]5O)[C@H](O)[C@H]4NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@H](O)[C@H](O[C@@]6(C[C@H](O)[C@@H](NC(C)=O)[C@@H](O6)[C@H](O)[C@H](O)CO)C(O)=O)[C@H]5O)[C@H](O)[C@H]4NC(C)=O)[C@@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@@H]1O

Mass

	Monoisotopic Mass	Average Mass
Underivatised Oligosaccharides	2222.783	2224.0229
Permethylated Oligosaccharides	2769.3936	2771.071
Peracetylated Oligosaccharides	3525.1104	3527.1785

Glycan Motifs

Motif ID	Structure / SubStructure Name	Note
JCGG-MOTIF1001	N-glycan core structure	Reducing Terminal
JCGG-MOTIF4124	Neu5Ac(a2-3)Gal(b1-4)GlcNAc	NON-Reducing Terminal

ID History Deleted Version

JCGG-STR031438(2)

External Links

GMDB (MSⁿ)

GMDB ONS-000201

MDHPLCDB (HPLCⁿ)

MDHPLCDB 2A4-200.4 2A4-200.4

GlycomeDB (Structure)

GlycomeDB 2382 2382

KEGG (Structure)

KEGG G10702 G10702

CarbBank

CCSD : 1854

Title : Structures of the asparagine-linked sugar chains of human chorionic gonadotropin

Authors : Endo Y; Yamashita K; Tachibana Y; Tojo S; Kobata A

Info : J Biochem (1979) 85: 669-679

TAXID : 9606 Genus Species : man Scientific Name : Homo sapiens Other Data : 2010-12-17

CCSD : 5466

Title : Isolation and characterization of N- and O-glycosidic carbohydrate units of human chorionic gonadotropin

Authors : Bahl OP; Marz L; Kessler MJ

Info : Biochem Biophys Res Commun (1978) 84: 667-676

TAXID : 9606 Genus Species : man Scientific Name : Homo sapiens Other Data : 2010-12-17

CCSD : 7429

Title : Expression of .beta.-galactoside .alpha.2,6 sialyltransferase blocks synthesis of polysialic acid in Xenopus embryos

Authors : Livingston BD; DeRobertis EM; Paulson JC

Info : Glycobiology (1990) 1: 39-44

TAXID : 8355 Other Data : 2010-12-17

CCSD : 20869

Title : Site-specific N-glycosylation of human chorionic gonadotropin. Structural analysis of glycopeptides by one- and two-dimensional proton NMR spectroscopy

Authors : Weisshaar G; Hiyama J; Renwick AGC

Info : Glycobiology (1991) 1: 393-404

TAXID : 9606 Genus Species : man Scientific Name : Homo sapiens Other Data : 2010-12-17

CCSD : 25740

Title : Structures, function, and transformational changes of the sugar chains of glycohormones

Authors : Kobata A

Info : J Cell Biochem (1988) 37: 79-90

TAXID : 9606 Genus Species : man Scientific Name : Homo sapiens Other Data : urine Other Data : 2010-12-17

CCSD : 38429

Title : Protein-specific glycosyltransferases: how and why they do it!

Authors : Baenziger JU

Info : FASEB J (1994) 8: 1019-1025

Other Data : 2010-12-17

CCSD : 46674

Title : Sialyltransferase messenger ribonucleic acid increases in thyrotrophs of hypothyroid mice: An in situ hybridization study

Authors : Helton TE; Magner JA

Info : Endocrinology (1994) 134: 2347-2353

TAXID : 10090 Other Data : pituitary Other Data : 2010-12-17

CCSD : 46826

Title : Rapid and simple approach for the NMR resonance assignment of the carbohydrate chains of an intact glycoprotein. Application of gradient- enhanced natural abundance 1H-13C HSQC and HSQC-TOCSY to the .alpha.-subunit of human chorionic gonadotropin

Authors : de Beer T; van Zuylen CWEM; Hard K; Boelens R; Kaptein R; Kamerling JP; Vliegenthart JPG

Info : FEBS Lett (1994) 348: 1-6

TAXID : 9606 Genus Species : man Scientific Name : Homo sapiens Other Data : 2010-12-17

JCGGDB ID JCGG-STR014874

Glycan Information

External Links