JCGG-STR013587:JCGGDB ID

JCGGDB Glycan Structure Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology (AIST)

Glycan Information

Glyco Tree get Image

Composition

Hex 6 HexNAc 3 Neu5Ac 1
Mass Value Search

Gal 5 Glc 1 GlcNAc 3 Neu5Ac 1
Structural Isomer Search

Descriptors Computed from Structure

InChIKey	ARHLGIGGYFDFAD-QIYHYQBTSA-N
InChI	InChI=1S/C71H118N4O54/c1-16(85)72-31-20(89)5-71(70(109)110,128-56(31)35(91)21(90)6-76)129-60-39(95)25(10-80)116-69(51(60)107)123-54-29(14-84)119-64(34(43(54)99)75-19(4)88)126-59-40(96)30(15-111-62-32(73-17(2)86)41(97)52(27(12-82)117-62)121-66-49(105)58(38(94)24(9-79)114-66)127-65-47(103)44(100)36(92)22(7-77)113-65)120-68(50(59)106)122-53-28(13-83)118-63(33(42(53)98)74-18(3)87)125-57-37(93)23(8-78)115-67(48(57)104)124-55-26(11-81)112-61(108)46(102)45(55)101/h20-69,76-84,89-108H,5-15H2,1-4H3,(H,72,85)(H,73,86)(H,74,87)(H,75,88)(H,109,110)/t20-,21+,22+,23+,24+,25+,26+,27+,28+,29+,30+,31+,32+,33+,34+,35+,36-,37-,38-,39-,40-,41+,42+,43+,44-,45+,46+,47+,48+,49+,50+,51+,52+,53+,54+,55+,56+,57-,58-,59-,60-,61+,62+,63-,64-,65+,66-,67-,68-,69-,71-/m0/s
SMILES	CC(=O)N[C@@H]1[C@@H](O)C[C@@](O[C@H]2[C@@H](O)[C@@H](CO)O[C@@H](O[C@@H]3[C@@H](CO)O[C@@H](O[C@H]4[C@@H](O)[C@@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O[C@H]7O[C@H](CO)[C@H](O)[C@H](O)[C@H]7O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)O[C@@H](O[C@@H]5[C@@H](CO)O[C@@H](O[C@H]6[C@@H](O)[C@@H](CO)O[C@@H](O[C@@H]7[C@@H](CO)O[C@@H](O)[C@H](O)[C@H]7O)[C@@H]6O)[C@H](NC(C)=O)[C@H]5O)[C@@H]4O)[C@H](NC(C)=O)[C@H]3O)[C@@H]2O)(O[C@H]1[C@H](O)[C@H](O)CO)C(O)=O

Mass

	Monoisotopic Mass	Average Mass
Underivatised Oligosaccharides	1890.6609	1891.7125
Permethylated Oligosaccharides	2367.1934	2368.6262
Peracetylated Oligosaccharides	3108.9673	3110.7932

Glycan Motifs

Motif ID	Structure / SubStructure Name	Note
JCGG-MOTIF3009	neolacto	Reducing Terminal
JCGG-MOTIF4062	Paragloboside	Reducing Terminal
JCGG-MOTIF4099	Alpha-Galactosyl Epitope	NON-Reducing Terminal
JCGG-MOTIF4124	Neu5Ac(a2-3)Gal(b1-4)GlcNAc	NON-Reducing Terminal

External Links

JCGG	JCGG JGD-000826 JGD-000826 Reducing terminal: (b-1)Cer

LipidBank (Spectral Data)

LipidBank GSG1259 GSG1259

Description: NeuAc2-3Galb1-4GlcNAcb1-3(Gala1-3Galb1-4GlcNAcb1-6)Galb1-4GlcNAcb1-3Galb1-4GlcCer
Reducing terminal: (b-)Cer

GlycomeDB (Structure)

GlycomeDB 2262 2262

KEGG (Structure)

KEGG G00877 G00877

PACDB(Pathogen adhesion)

Pathogen:	Mycoplasma pneumoniae (M129; virulent)
Glycan Name:	I-active sialyl lactoisooctaosyl ceramide [ Not Binding]

Pathogen:	Rotavirus (Neuraminidase-sensitive; simian:SA11(P2/G3) / bovine:NCDV(P1/G6))
Glycan Name:	I-active sialyl lactoisooctaosyl ceramide [ Binding]

Pathogen:	Helicobacter pylori
Glycan Name:	I-active sialyl lactoisooctaosyl ceramide [ Not Binding]

CarbBank

CCSD : 1733

Title : Characterization of blood-group I-active gangliosides: structural requirements for I- and i-specificities

Authors : Watanabe K; Hakomori S; Childs RA; Feizi T

Info : J Biol Chem (1979) 254: 3221-3228

TAXID : 9913 Other Data : erythrocyte Other Data : 2010-12-17

CCSD : 16286

Title : Human influenza A virus hemagglutinin distinguishes sialyloligosaccharides in membrane-associated gangliosides as its receptor which mediates the adsorption and fusion processes of virus infection. Specificity for oligosaccharides and sialic acids and the sequence to which sialic acid is attached

Authors : Suzuki Y; Nagao Y; Kato H; Matsumoto M; Nerome K; Nakajima K; Nobusawa E

Info : J Biol Chem (1986) 261: 17057-17061

Other Data : 2010-12-17

CCSD : 16719

Title : Two novel isoneolacto-undecaglycosylceramides carying Gal.alpha.1-3Lewis(x) on the 6-linked antenna and N-acetylneuraminic acid.alpha.2-3 or Galactose.alpha.1-3 on the 3-linked antenna, expressed in porcine kidney

Authors : Bouhours D; Liaigre J; Lemoine J; Mayer-Posner F; Bouhours JF

Info : Glycoconj J (1998) 15: 1001-1016

TAXID : 9823 Other Data : kidney Other Data : 2010-12-17

CCSD : 17415

Title : A monoclonal antibody defining a binary N-acetyllactosaminyl structure in lactoisooctaosylceramide (IV6Gal.beta.1-4 GlcNAcnLc6): a useful probe for determining differential glycosylation patterns between normal and transformed human fibroblasts

Authors : Fenderson BA; Nichols EJ; Clausen H; Hakomori S

Info : Mol Immunol (1986) 23: 747-754

Other Data : 2010-12-17

CCSD : 25535

Title : Adhesion of Mycoplasma pneumoniae to sulfated glycolipids and inhibition by dextran sulfate

Authors : Krivan HC; Olson LD; Barile MF; Ginsburg V; Roberts DD

Info : J Biol Chem (1989) 264: 9283-9288

Other Data : 2010-12-17

CCSD : 25596

Title : Regulation of the expression of Gal.alpha.1-3Gal.beta.1-4GlcNAc glycosphingolipids in kidney

Authors : Hendricks SP; He P; Stults CLM; Macher BA

Info : J Biol Chem (1990) 265: 17621-17626

Other Data : kidney Other Data : 2010-12-17

CCSD : 30991

Title : Branched monosialo gangliosides of the lacto-series isolated from bovine erythrocytes: characterization of a novel ganglioside, NeuGc- isooctaosylceramide

Authors : Dasgupta S; Hogan EL; Glushka J; van Halbeek H

Info : Arch Biochem Biophys (1994) 310: 373-384

TAXID : 9913 Other Data : erythrocyte Other Data : 2010-12-17

CCSD : 37109

Title : Fine specificity of a monoclonal anti-testicular cell antibody for glycolipids with terminal N-acetyl-D-glucosamine structure

Authors : Symington FW; Fenderson BA; Hakomori SI

Info : Mol Immunol (1984) 21: 877-882

TAXID : 9913 Other Data : erythrocyte Other Data : 2010-12-17

JCGGDB ID JCGG-STR013587

Glycan Information

External Links