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JCGGDB Glycan Structure
Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology (AIST)
JCGGDB ID
JCGG-STR011692
version 2
Glycan Information
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Composition
Hex 1 HexA 3 HexNAc 2 SO3 6 anhydro 1
Mass Value Search
GalNAc 2 Hex 1 IdoA 3 SO3 6 anhydro 1
Structural Isomer Search
Mass
Monoisotopic Mass
Average Mass
Underivatised
Oligosaccharides
1078.05 (A
n=2
)
=? +
A[539.025]
n=2
1078.8986 (A
n=2
)
=? +
A[539.4493]
n=2
Permethylated
Oligosaccharides
1190.1752 (A
n=2
)
=? +
A[595.0876]
n=2
1191.1136 (A
n=2
)
=? +
A[595.5568]
n=2
Peracetylated
Oligosaccharides
1246.0927 (A
n=2
)
=? +
A[623.0463]
n=2
1247.0476 (A
n=2
)
=? +
A[623.5238]
n=2
Glycan Motifs
Motif ID
Structure / SubStructure Name
Note
JCGG-MOTIF5008
Dermatan Sulfate/iB-unit
SubStructure
The number of Unknown information on Anomeric carbons, D/L isomers
1
External Links
GlycomeDB
(Structure)
GlycomeDB
20842
20842
KEGG
(Structure)
KEGG
G05469
G05469
CarbBank
CCSD
:
21629
Title
: Structure of a dermatan sulfate hexasaccharide that binds to heparin cofactor II with high affinity
Authors
: Maimone MM; Tollefsen DM
Info
: J Biol Chem (1990) 265: 18263-18271
Other Data
: 2010-12-17
©2008-2009 Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology (AIST)
CompositionMass
Glycan MotifsThe number of Unknown information on Anomeric carbons, D/L isomers
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