JCGG-STR009323:JCGGDB ID

JCGGDB Glycan Structure Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology (AIST)

JCGGDB ID JCGG-STR009323

GlyTouCan G10219AA

version 2

Glycan Information

Glyco Tree get Image

Composition

Hex 3 HexNAc 5
Mass Value Search

GlcNAc 5 Man 3
Structural Isomer Search

Descriptors Computed from Structure

InChIKey	ZJNUAVANWGGSFB-MNCUYRTGSA-N
InChI	InChI=1S/C58H97N5O41/c1-14(70)59-27-41(84)46(23(10-68)92-51(27)89)100-55-31(63-18(5)74)42(85)47(24(11-69)97-55)101-56-45(88)48(102-58-50(43(86)35(78)22(9-67)96-58)104-54-30(62-17(4)73)40(83)34(77)21(8-66)95-54)37(80)26(98-56)13-91-57-49(103-53-29(61-16(3)72)39(82)33(76)20(7-65)94-53)44(87)36(79)25(99-57)12-90-52-28(60-15(2)71)38(81)32(75)19(6-64)93-52/h19-58,64-69,75-89H,6-13H2,1-5H3,(H,59,70)(H,60,71)(H,61,72)(H,62,73)(H,63,74)/t19-,20-,21-,22-,23-,24-,25-,26-,27-,28-,29-,30-,31-,32-,33-,34-,35-,36-,37-,38-,39-,40-,41-,42-,43+,44+,45+,46-,47-,48+,49+,50+,51-,52-,53+,54+,55+,56+,57+,58-/m1/s
SMILES	CC(=O)N[C@H]1[C@H](O)O[C@H](CO)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4NC(C)=O)[C@@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@@H]1O

Mass

	Monoisotopic Mass	Average Mass
Underivatised Oligosaccharides	1519.5659	1520.4174
Permethylated Oligosaccharides	1883.9727	1885.116
Peracetylated Oligosaccharides	2401.7876	2403.2

Glycan Motifs

Motif ID	Structure / SubStructure Name	Note
JCGG-MOTIF1001	N-glycan core structure	Reducing Terminal

External Links

MDHPLCDB (HPLCⁿ)

MDHPLCDB 300.11 300.11

GlycomeDB (Structure)

GlycomeDB 1866 1866

KEGG (Structure)

KEGG G10818 G10818

CarbBank

CCSD : 7654

Title : Structural analysis of the oligosaccharides of DR1 and DQw1 molecules

Authors : Iturbe S; Narasimhan S; Letarte M

Info : J Immunol (1986) 136: 4596-4603

TAXID : 9606 Genus Species : man Scientific Name : Homo sapiens Other Data : 2010-12-17

CCSD : 30029

Title : Structures and functions of the sugar chains of glycoproteins

Authors : Kobata A

Info : Eur J Biochem (1992) 209: 483-501

Other Data : 2010-12-17

CCSD : 34936

Title : Selective suppression of N-acetylglucosaminyltransferase III activity in a human hepatoblastoma cell line transfected with hepatitis B virus

Authors : Miyoshi E; Nishikawa A; Ihara Y; Hayashi N; Fusamoto H; Kamada T; Taniguchi N

Info : Cancer Res (1994) 54: 1854-1858

Other Data : 2010-12-17

CCSD : 35724

Title : Assembly of asparagine-linked oligosaccharides

Authors : Kornfeld R; Kornfeld S

Info : Ann Rev Biochem (1985) 54: 631-664

Other Data : 2010-12-17

CCSD : 43246

Title : Effect of retinoic acid on the structure of N-glycans on the surface of human hepatocarcinoma cells and its enzymatic mechanism

Authors : Chen HL; Dong SC; Ju TZ; Yang XP

Info : J Cancer Res Clin Oncol (1995) 121: 397-401

TAXID : 9606 Genus Species : man Scientific Name : Homo sapiens Other Data : liver Other Data : cell line:7721 Other Data : 2010-12-17

CCSD : 47826

Title : Modification of glycoproteins by N-acetylglucosaminyltransferase V is greatly influenced by accessiblity of the enzyme to oligosaccharide acceptors

Authors : Do KY; Fregien N; Pierce M; Cummings RD

Info : J Biol Chem (1994) 269: 23456-23464

Other Data : 2010-12-17

CCSD : 47937

Title : Transforming growth factor .beta. up-regulates expression of the N- acetylglycosaminyltransferase V gene in mouse melanoma cells

Authors : Miyoshi E; Nishikawa A; Ihara Y; Saito H; Uozumi N; Hayashi N; Fusamoto H; Kamada T; Taniguchi N

Info : J Biol Chem (1995) 270: 6216-6220

TAXID : 10090 Other Data : melanoma cells Other Data : cell line:B-16 Other Data : 2010-12-17