JCGG-STR002667:JCGGDB ID

JCGGDB Glycan Structure Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology (AIST)

Glycan Information

Glyco Tree get Image

Composition

Hex 12 HexNAc 2
Mass Value Search

Glc 3 GlcNAc 2 Man 9
Structural Isomer Search

Descriptors Computed from Structure

InChIKey	KUYCTNQKTFGPMI-RQQQLFSBSA-N
InChI	InChI=1S/C88H148N2O71/c1-17(103)89-33-47(117)64(29(13-101)137-75(33)134)151-76-34(90-18(2)104)48(118)65(30(14-102)148-76)152-83-63(133)69(46(116)32(150-83)15-135-77-60(130)68(155-86-72(54(124)40(110)24(8-96)145-86)159-80-59(129)51(121)37(107)21(5-93)140-80)45(115)31(149-77)16-136-84-70(52(122)38(108)22(6-94)143-84)157-78-57(127)49(119)35(105)19(3-91)138-78)156-87-74(56(126)42(112)25(9-97)146-87)161-88-73(55(125)41(111)26(10-98)147-88)160-82-61(131)66(43(113)27(11-99)142-82)153-81-62(132)67(44(114)28(12-100)141-81)154-85-71(53(123)39(109)23(7-95)144-85)158-79-58(128)50(120)36(106)20(4-92)139-79/h19-88,91-102,105-134H,3-16H2,1-2H3,(H,89,103)(H,90,104)/t19-,20-,21-,22-,23-,24-,25-,26-,27-,28-,29-,30-,31-,32-,33-,34-,35-,36-,37-,38-,39-,40-,41-,42-,43-,44-,45-,46-,47-,48-,49+,50+,51+,52+,53+,54+,55+,56+,57+,58-,59+,60+,61+,62-,63+,64-,65-,66+,67+,68+,69+,70+,71-,72+,73+,74+,75-,76+,77+,78-,79-,80-,81-,82-,83+,84+,85-,86-,87-,88-/m1/s
SMILES	CC(=O)N[C@H]1[C@H](O)O[C@H](CO)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]5O[C@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]5O)[C@@H](O)[C@H](O[C@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]5O[C@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]5O)[C@@H]4O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O[C@H]5O[C@H](CO)[C@@H](O)[C@H](O[C@H]6O[C@H](CO)[C@@H](O)[C@H](O)[C@H]6O[C@H]6O[C@H](CO)[C@@H](O)[C@H](O)[C@H]6O)[C@H]5O)[C@@H]4O)[C@@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@@H]1O

Mass

	Monoisotopic Mass	Average Mass
Underivatised Oligosaccharides	2368.8029 (A_n=2 B_n=2 ) = 1720.5917+ A[162.0528]_n=2+ B[162.0528]_n=2	2370.114 (A_n=2 B_n=2 ) = 1721.5444+ A[162.1424]_n=2+ B[162.1424]_n=2
Permethylated Oligosaccharides	2985.4918 (A_n=2 B_n=2 ) = 2169.093+ A[204.0997]_n=2+ B[204.0997]_n=2	2987.2963 (A_n=2 B_n=2 ) = 2170.4043+ A[204.223]_n=2+ B[204.223]_n=2
Peracetylated Oligosaccharides	4133.2467 (A_n=2 B_n=2 ) = 2980.9087+ A[288.0845]_n=2+ B[288.0845]_n=2	4135.6792 (A_n=2 B_n=2 ) = 2982.6624+ A[288.2542]_n=2+ B[288.2542]_n=2

Glycan Motifs

Motif ID	Structure / SubStructure Name	Note
JCGG-MOTIF1001	N-glycan core structure	Reducing Terminal

ID History Deleted Version

JCGG-STR033140(3)

External Links

JCGG	JCGG JGD-000206 JGD-000206

GlycomeDB (Structure)

GlycomeDB 1245 1245

KEGG (Structure)

KEGG G00009 G00009

KEGG G12097 G12097

CarbBank

CCSD : 5475

Title : Characterization of calf liver glucosidase I and its inhibition by basic sugar analogs

Authors : Schweden J; Borgmann C; Legler G; Bause E

Info : Arch Biochem Biophys (1986) 248: 335-340

Other Data : 2010-12-17

CCSD : 6041

Title : Oligosaccharyltransferase: synthesis and use of deuterium-labeled peptide substrates as mechanistic probes

Authors : Lee J; Coward JK

Info : Biochemistry (1993) 32: 6794-6801

Other Data : 2010-12-17

CCSD : 11436

Title : The synthesis of complex-type oligosaccharides. II. Characterization of the processing intermediates in the synthesis of the complex oligosaccharide units of the vesicular stomatitis virus G protein

Authors : Kornfeld S; Li E; Tabas I

Info : J Biol Chem (1978) 253: 7771-7778

TAXID : 11276 Other Data : 2010-12-17

CCSD : 29122

Title : Mini-review. Analysis of glycoprotein oligosaccharides using high-pH anion exchange chromatography

Authors : Townsend RR; Hardy MR

Info : Glycobiology (1991) 1: 139-147

Other Data : 2010-12-17

CCSD : 29170

Title : Conditional intercellular cohesion in a Dictyostelium discoideum mutant which is temperature sensitive for correct processing of asparagine-linked oligosaccharides

Authors : Boose JA; Henderson EJ

Info : Glycobiology (1991) 1: 295-305

TAXID : 44689 Other Data : 2010-12-17

CCSD : 30085

Title : Carbohydrate masking of an antigenic epitope of influenza virus haemagglutinin independent of oligosaccharide size

Authors : Munk K; Pritzer E; Kretzschmar E; Gutte B; Garten W; Klenk HD

Info : Glycobiology (1992) 2: 233-240

TAXID : 11309 Other Data : 2010-12-17

CCSD : 31273

Title : Glycosidases of the asparagine-linked oligosaccharide processing pathway

Authors : Moremen KW; Trimble RB; Herscovics A

Info : Glycobiology (1994) 4: 113-125

Other Data : 2010-12-17

CCSD : 33591

Title : Efficiency of N-linked core glycosylation at aspargine-319 of rabies virus glycoprotein is altered by deletions C-terminal to the glycosylation sequon

Authors : Shakin-Eshleman SH; Wunner WH; Spitalnik SL

Info : Biochemistry (1993) 32: 9465-9472

TAXID : 11292 Other Data : 2010-12-17

CCSD : 37047

Title : How N-linked oligosaccharides affect glycoprotein folding in the endoplasmic reticulum

Authors : Helenius A

Info : Mol Biol Cell (1994) 5: 253-265

Other Data : 2010-12-17

CCSD : 38411

Title : Glycosidase inhibitors: inhibitors of N-linked oligosaccharide processing

Authors : Elbein AD

Info : FASEB J (1991) 5: 3055-3063

Other Data : 2010-12-17

CCSD : 38430

Title : Protein-specific glycosyltransferases: how and why they do it!

Authors : Baenziger JU

Info : FASEB J (1994) 8: 1019-1025

Other Data : 2010-12-17

CCSD : 38475

Title : Mammalian .alpha.-mannosidases-multiple forms but a common purpose?

Authors : Daniel PF; Winchester B; Warren CD

Info : Glycobiology (1994) 4: 551-566

Other Data : 2010-12-17

CCSD : 40391

Title : Glycoprotein hormones: glycobiology of gonadotrophins, thyrotrophin and free .alpha. subunit

Authors : Thotakura NR; Blithe DL

Info : Glycobiology (1995) 5: 3-10

TAXID : 9606 Genus Species : man Scientific Name : Homo sapiens Other Data : 2010-12-17

CCSD : 41487

Title : Characterization of glycoproteins and their associated oligosaccharides through the use of endoglycosidases

Authors : Maley F; Trimble RB; Tarentino AL; Plummer TH

Info : Anal Biochem (1989) 180: 195-204

Other Data : 2010-12-17

CCSD : 46814

Title : Concepts and principles of glycobiology

Authors : Opdenakker G; Rudd PM; Ponting CP; Dwek RA

Info : FASEB J (1993) 7: 1330-1337

TAXID : 9606 Genus Species : man Scientific Name : Homo sapiens Other Data : 2010-12-17

CCSD : 46824

Title : The N-oligosaccharyltransferase complex from yeast

Authors : Knauer R; Lehle L

Info : FEBS Lett (1994) 344: 83-86

TAXID : 4932 Other Data : 2010-12-17

CCSD : 49336

Title : Recent progress in molecular cloning of glycosyltransferase genes of eukaryotes

Authors : Narimatsu H

Info : Microbiol Immunol (1994) 38: 489-504

Other Data : 2010-12-17

CCSD : 50776

Title : Functions of HIV envelope glycans

Authors : Fenouillet E; Gluckman JC; Jones IM

Info : Trends Biochem Sci (1994) 19: 65-70

TAXID : 57667 Other Data : envelope Other Data : 2010-12-17

JCGGDB ID JCGG-STR002667

Glycan Information

External Links