JCGG-STR025441:JCGGDB ID

JCGGDB Glycan Structure Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology (AIST)

Glycan Information

Glyco Tree get Image

Composition

Hex 1 Pen 2
Mass Value Search

Glc 1 Xyl 2
Structural Isomer Search

Descriptors Computed from Structure

InChIKey	BLASHPVRFCCALK-IVCVOHDKSA-N
InChI	InChI=1S/C16H28O14/c17-1-6-8(21)13(10(23)14(25)28-6)30-16-11(24)12(5(19)3-27-16)29-15-9(22)7(20)4(18)2-26-15/h4-25H,1-3H2/t4-,5-,6-,7+,8-,9-,10-,11-,12+,13+,14-,15-,16-/m1/s
SMILES	OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O[C@H]2OC[C@@H](O)[C@H](O[C@H]3OC[C@@H](O)[C@H](O)[C@H]3O)[C@H]2O)[C@@H]1O

Mass

	Monoisotopic Mass	Average Mass
Underivatised Oligosaccharides	444.1479 (A_n=2 ) = 180.0633+ A[132.0423]_n=2	444.3898 (A_n=2 ) = 180.1576+ A[132.1161]_n=2
Permethylated Oligosaccharides	570.2889 (A_n=2 ) = 250.1417+ A[160.0736]_n=2	570.6318 (A_n=2 ) = 250.292+ A[160.1699]_n=2
Peracetylated Oligosaccharides	822.243 (A_n=2 ) = 390.1162+ A[216.0634]_n=2	822.7254 (A_n=2 ) = 390.344+ A[216.1907]_n=2

ID History Deleted Version

JCGG-STR032574(3) JCGG-STR033082(3) JCGG-STR033193(3) JCGG-STR033207(3) JCGG-STR033512(3)

External Links

JCGG	JCGG JGD-000285 JGD-000285 JCGG JGD-000314 JGD-000314 Reducing terminal: (b-)Ser JCGG JGD-000090 JGD-000090 JCGG JGD-000130 JGD-000130 Reducing terminal: (b-)Ser JCGG JGD-001247 JGD-001247

GlycomeDB (Structure)

GlycomeDB 4492 4492

KEGG (Structure)

KEGG G10913 G10913

CarbBank

CCSD : 19253

Title : Synthesis of new serine-linked oligosaccharides in blood-clotting factors VII and IX and protein Z. The syntheses of O-.alpha.-D-xylopyranosyl-(1- 3)-D-glucopyranose, O-.alpha.-D-xylopyranosyl-(1-3)-O-.alpha.-D-xylopyranosyl-(1-3)-D- glucopyranose, and their conjugates with serine

Authors : Fukase K; Hase S; Ikenaka T; Kusumoto S

Info : Bull Chem Soc Jpn (1992) 65: 436-445

Other Data : 2010-12-17

CCSD : 21558

Title : The structure of (xylose)2glucose-O-serine 53 found in the first epidermal growth factor-like domain of bovine blood clotting factor IX

Authors : Hase S; Nishimura H; Kawabata S; Iwanaga S; Ikenaka T

Info : J Biol Chem (1990) 265: 1858-1861

TAXID : 9913 Other Data : blood Other Data : 2010-12-17

CCSD : 27494

Title : Mini-review. O-linked fucose and other post-translational modifications unique to EGF modules

Authors : Harris RJ; Spellman MW

Info : Glycobiology (1993) 3: 219-224

TAXID : 9606 Genus Species : man Scientific Name : Homo sapiens Other Data : 2010-12-17

CCSD : 27711

Title : Evidence for the existence of O-linked sugar chains consisting of glucose and xylose in bovine thrombospondin

Authors : Nishimura H; Yamashita S; Zeng Z; Walz DA; Iwanaga S

Info : J Biochem (1992) 111: 460-464

TAXID : 9913 Other Data : 2010-12-17

CCSD : 29361

Title : Protein glycosylation. Structural and functional aspects

Authors : Lis H; Sharon N

Info : Eur J Biochem (1993) 218: 1-27

Other Data : 2010-12-17

CCSD : 32531

Title : Small-scale solid-phase O-glycopeptide synthesis of linear and cyclized hexapeptides from blood-clotting factor IX containing O-(.alpha.-D-Xyl- 1-3-.alpha.-D-Xyl-1-3-.beta.-D-Glc)-L-Ser

Authors : Reimer KB; Meldal M; Kusumoto S; Fukase K; Bock K

Info : J Chem Soc Perkin Trans (1993) : 925-932

Other Data : 2010-12-17

CCSD : 46440

Title : Enzymes involved in mammalian oligosaccharide biosynthesis

Authors : Natsuka S; Lowe JB

Info : Curr Opin Struct Biol (1994) 4: 683-691

Other Data : 2010-12-17

CCSD : 46457

Title : Novel forms of protein glycosylation

Authors : Hayes BK; Hart GW

Info : Curr Opin Struct Biol (1994) 4: 692-696

Other Data : 2010-12-17

JCGGDB ID JCGG-STR025441

Glycan Information

External Links