JCEG ID |
JCEG200 |
Name |
T28F3.9
WormBase
NCBI Gene
|
Human Ortholog |
GGDB:GCNT3
OMIM:
OrthoList :
GCNT7
GCNT4
GCNT2
GCNT3
GCNT1
GCNT6
(Ensembl Compara)
Option tblastn : Query Worm Protein, Subject GGDB mRNA, E-val < 0.00001
|
Family Name |
b6GnT |
Locus Tag |
T28F3.9
|
RNAi phenotype |
phenotype
|
WT
|
Microscope observation (Image)
|
|
COPAS (Image)
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Normal
|
hsp-4::GFP (Image)
|
|
|
Sequence Features |
kr:Detected
tm:Detected
dxd:NHD/
gg_motif:M1, M2, M4
|
Sequence |
CDS
atgccacgtataaaacatttccatgagcccttggacgaaaaagaagcttt gatcgatgaaaattgtaacgatgttgaatttgttccaaacttcaaatatc aaaagagaaaaagaaagtttccagcagtaacaaagctctctaagtatttg ctattattttttggaagcacagtaatatgtttgtgcattttttatgtaac gaaacctcagttaaacgacaactttgatccaaatatatcagacaagcgaa aaattcgaatttatgaggatattattgatgctatgagaaatcgaaaaaag tctgggaatttctatataaaaaggccagaaacacaacatgttgattgtgg aagaatattgaacggagataaagagtacttacaaacagtttctaacaata atcgaattccactaatcaaaaactcatatttgaacatgtcatgctcatct cttcagagcagaattcaacctgaacaatttaatttcgaaacttttaaatc tggaagtgttgctttcgctagaatcgtgtttgaggattacgagtttatcg agaaacaagttcaaatgtcttggcacccggataacgtattttgttttgtt atcgatacaaaatcatcgaaggaatttaaaatgaatatgaaaaaattaga tgattgctttgaaaatataattgtactaccagctgaacatagttttgata gtagtgggcataatcaaaatcttggccataccgaatgcatgcaatctctt cttcaattcgaaaattggacatatttactacttcttcaaaaccatgacgt catttccaaatctgtctacgaattagctagaatttatgaaatactcggag gagccaatgatgtaaatattggagcagaaattgatcagaggcgggttcca ggactaaaatgggatgcaaaaaacttgaagttgtttcgaaacgaatcggg actcgatgatgaacttttgaagaaaccaatgaaaatagccagtggatatg ttcaagcttcactgtcaagagcagctgttgaatggttaatcaatacagtg gatttaacattattcatcaaccagtttgatcgaacgaaatatggcggaga cgagcagctgatttccagttttcaagtgaattcacaatttgaaatgcctg gacactttacggatgagtgttccaaatatcgttatgggcatgatcaaatc tcaaggatgactcaatggtctggcggtgatgtaaaaaggtgtgcctcaaa aaccatacgtcatgggatttgtctgatcggaattgaagatttcagagctg tttctgaaatgccggttattatgtttaataagatgctgccatcgttcgac tattccataattgattgtacagctgaactcctttttaatcgaacgttttt gaatcagacaaatataaaaatgaatgaaaagtactatgaagaaatggtta cggttatttatcacaaagatcacaaaaatccgggttatcatctgaattgc acccccagtcatcaatattggaaatatgaaaattatttgtaa
|
Protein
MPRIKHFHEPLDEKEALIDENCNDVEFVPNFKYQKRKRKFPAVTKLSKYLLLFFGSTVIC LCIFYVTKPQLNDNFDPNISDKRKIRIYEDIIDAMRNRKKSGNFYIKRPETQHVDCGRIL NGDKEYLQTVSNNNRIPLIKNSYLNMSCSSLQSRIQPEQFNFETFKSGSVAFARIVFEDY EFIEKQVQMSWHPDNVFCFVIDTKSSKEFKMNMKKLDDCFENIIVLPAEHSFDSSGHNQN LGHTECMQSLLQFENWTYLLLLQNHDVISKSVYELARIYEILGGANDVNIGAEIDQRRVP GLKWDAKNLKLFRNESGLDDELLKKPMKIASGYVQASLSRAAVEWLINTVDLTLFINQFD RTKYGGDEQLISSFQVNSQFEMPGHFTDECSKYRYGHDQISRMTQWSGGDVKRCASKTIR HGICLIGIEDFRAVSEMPVIMFNKMLPSFDYSIIDCTAELLFNRTFLNQTNIKMNEKYYE EMVTVIYHKDHKNPGYHLNCTPSHQYWKYENYL
|
References |
|
Functional Descriptions |
T28F3.9
none available
|
Deletion Mutants |
|
In Situ |
|
Expression |
Expression
db_name |
wbbt |
name |
def |
reliability |
expr_pattern |
paper |
WormAtlas |
WB |
WBbt:0003679
|
neuron |
"Major cell type of nervous tissue, specialized for transmission of information in the form of patterns of impulses." [ISBN:0140512888] |
Enriched |
WBPaper00037950 : all-neurons_larva_SelectivelyEnriched, all-neurons_larva_enriched
|
WBPaper00037950
|
WormAtlas
|
WB |
WBbt:0005751
|
coelomocyte |
"A free-floating spherical cell lying in the pseudocoelomic cavity of larvae and adult C. elegans which can endocytose many compounds, possibly for immune surveillance. There are six coelomocytes in adult hermaphrodites, and they display prominent cytoplasmic inclusions and vacuoles." [WBPaper:00038216] |
Enriched |
WBPaper00037950 : coelomocytes_CoreEnriched, coelomocytes_embryo_SelectivelyEnriched, coelomocytes_embryo_enriched, coelomocytes_larva_SelectivelyEnriched, coelomocytes_larva_enriched
|
WBPaper00037950
|
WormAtlas
|
|
WBGene00012135
Phenotype
Homology_paralog
|
|
Phenotype |
Definition |
RNAi / Allele |
embryonic lethal
|
"Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die." [WB:cab, WB:WBPaper00000179, WB:WBPaper00004403, WB:WBPaper00004540, WB:WBPaper00004651, WB:WBPaper00004769, WB:WBPaper00005654, WB:WBPaper00024497, WB:WBPaper00024925, WB:WBPaper00025054]
|
|
larval arrest
|
"The developmental program of the animals halts at any larval stage and thus fails to reach adulthood. In C.elegans, this occurs anytime during L1-L4 stage." [WB:WBPaper00002958, WB:WBPerson2021]
|
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larval lethal
|
"The animal dies at any time between hatching and onset to adulthood." [GO:0002119, WB:WBPerson712]
|
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lethal
|
"Animals die prematurely at any stage of the life cycle." [WB:WBPaper00001109, WB:WBPerson2021]
|
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maternal sterile
|
" Animals produce no or very few embryos as a result of experimental treatment. This is in contrast to sterility due to genetic perturbations (maternal effect sterility)." [WB:cab, WB:cgc5599, WB:cgc7141, WB:WBPerson557]
|
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organism morphology variant
|
"Animals exhibit variations in the form, structure or composition of any part of their anatomy compared to control animals." [WB:cab, WB:WBPaper00004402, WB:WBPaper00004403, WB:WBPaper00004651, WB:WBPaper00005654, WB:WBPaper00006395]
|
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postembryonic development variant
|
"Any variation in the progression of an animal over time, from hatching to adulthood, compared to control." [WB:WBPerson2021]
|
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slow growth
|
"Any variation that causes a reduction in growth rate compared to control." [WB:cab, WB:WBPaper00004402, WB:WBPaper00004403, WB:WBPaper00004651, WB:WBPaper00004769, WB:WBPaper00005654, WB:WBPaper00006395, WB:WBPaper00024497, WB:WBPerson557]
|
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sterile progeny
|
"Any variation that compromises the reproductive ability of the progeny of an animal." [WB:WBPerson2021, WB:WBPerson557]
|
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Variant
|
"Animals exhibit variations compared to a given control." [WB:WBPerson557]
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