JCEG ID |
JCEG075 |
Name |
F17C11.7
WormBase
|
Human Ortholog |
GGDB:PIGT
OMIM:
610272
615398
615399
OrthoList :
PIGT
(Ensembl Compara)
|
Family Name |
GPI-anchor synthesis |
Locus Tag |
F17C11.7
|
RNAi phenotype |
phenotype
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Microscope observation (Image)
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COPAS (Image)
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hsp-4::GFP (Image)
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Sequence Features |
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Sequence |
CDS
ATGCGGATACTAACTTCTTATCTGCTGTTATCAATACTTTCATCATGCCATGGGCTTAGC GAGAATTTCGATGAAAAATTGACATTATCTCCAGTTAGTAAAAACGAGCTACGTGTTGAT TTTAGGTTTAATTCCGAGAGAGAATTCAACAGGAAAACAGAATCTGGCGATTATCTAACA TTCCCACGTATTATTCAAGAACTTCTCTCTCGTTATTCAGTTCGAAAATTGACTGTAACG ATGGCTCACGGACGTTGGAATTTAATTGGATGGGGACTTCCACCTCAACCGTCTTCTCCA ACTGGAGCTCAAGTTTTTGCAGAATTTGAAGCTGACCAACAAGAAGATGCCGATGAACGA ATGAAATTTTTGGTAGAAGCTTTAAATGGAGTTCTATGTACATCTATATCACATATCAAT GTTATCACGAGCCCAGAATTTATAGTTCTCAAAAACCATGGAGGAGAAACAAGTGTTCAT AAAAGATATGGTGTTCTGAGTGGTGAGACTACATGTACTGAAAACTTGACCAGACTCCGG AAGCTATTAGCTTGTAAAGAGAATGGTATCAGTACATTGCTTCATCCATCCAAACTATAC AACTCGGTGTATCATTCATCCCATCTCGTTGTGGAGCAACAATGTGACAAAGATCAATGC AACTCGAAAATGGAAGTAGGAGTATCTGTTGTTATGCGTAACCCGTCTCAAAAAACTCAA CGTCACTGGTCTCTGGCTGATGTGTTCGAACGAAAACTCGGATCGCAATGTAAAGTTGCT CGTAGTAGTAAAATACATGTTATTGGTACTACTGGAGAGATAACCACGACTGATGTGAAA AATCTAACAACAATCAATGGAGAAGAACCATTCGAATTATATATTCCAATAACTGATATT TCGATGAAACAATCAGTTGTGAAAGCGTGGTCTTCTCAGGGAGGATTCGAGCAGAAACAT GGAGTTTTGACTGTACACATTACAAATGACGAATCAGCTTCGGAAATTCATGTATCACAA ATTATTCCATATTATGTTCATTTACGTTACAGTAAAATCAACTGGAAATGTGATAAAAAT GGTGTTCCCCGTATTGAGAAGATCTTCAAGAATAGCAAAAGCTTGGAGGCGCCTACACTA CTACAGTACAAAATGAAACTTTCTGCAGGACAGACTTGTGAACTTACTATTCCATTTGAT AAGCAACTTTTGAGACTAGAACAATACCCACCAGATGCAAATCATGGAATGCATATTCCA GCAGCAAGTGTCTACATTCAAAAGAGCACCTCAACATACACAATTCATTCGAATGCCATC TTGGTCCTTCTACCAGTCCCCGATTTCTCAATGCCATTCAATGTGATTTGTTTCGTTGCC ACCGCTTTTGCTCTAGTCTTCGGACCAATTCAACTTTATTCAACACTTTGGTTGGCACCG GTCGTCAAAAAGTCACAATGGGGGCGGAAAATTCATCGGGCGATTCTTTTGGCTATCATT GCATTCTGCCTATATGCTCATATGATGGATATCAATTTGAACGAAATTCGACGTGGTATC GAAACATATTTTGAAAAGCTCAACGAACTTAAGTGA
ATGCGGATACTAACTTCTTATCTGCTGTTATCAATACTTTCATCATGCCATGGGCTTAGC GAGAATTTCGATGAAAAATTGACATTATCTCCAGTTAGTAAAAACGAGCTACGTGTTGAT TTTAGGTTTAATTCCGAGAGAGAATTCAACAGGAAAACAGAATCTGGCGATTATCTAACA TTCCCACGTATTATTCAAGAACTTCTCTCTCGTTATTCAGTTCGAAAATTGACTGTAACG ATGGCTCACGGACGTTGGAATTTAATTGGATGGGGACTTCCACCTCAACCGTCTTCTCCA ACTGGAGCTCAAGTTTTTGCAGAATTTGAAGCTGACCAACAAGAAGATGCCGATGAACGA ATGAAATTTTTGGTAGAAGCTTTAAATGGAGTTCTATTTCTCAAAAACCATGGAGGAGAA ACAAGTGTTCATAAAAGATATGGTGTTCTGAGTGGTGAGACTACATGTACTGAAAACTTG ACCAGACTCCGGAAGCTATTAGCTTGTAAAGAGAATGGTATCAGTACATTGCTTCATCCA TCCAAACTATACAACTCGGTGTATCATTCATCCCATCTCGTTGTGGAGCAACAATGTGAC AAAGATCAATGCAACTCGAAAATGGAAGTAGGAGTATCTGTTGTTATGCGTAACCCGTCT CAAAAAACTCAACGTCACTGGTCTCTGGCTGATGTGTTCGAACGAAAACTCGGATCGCAA TGTAAAGTTGCTCGTAGTAGTAAAATACATGTTATTGGTACTACTGGAGAGATAACCACG ACTGATGTGAAAAATCTAACAACAATCAATGGAGAAGAACCATTCGAATTATATATTCCA ATAACTGATATTTCGATGAAACAATCAGTTGTGAAAGCGTGGTCTTCTCAGGGAGGATTC GAGCAGAAACATGGAGTTTTGACTGTACACATTACAAATGACGAATCAGCTTCGGAAATT CATGTATCACAAATTATTCCATATTATGTTCATTTACGTTACAGTAAAATCAACTGGAAA TGTGATAAAAATGGTGTTCCCCGTATTGAGAAGATCTTCAAGAATAGCAAAAGCTTGGAG GCGCCTACACTACTACAGTACAAAATGAAACTTTCTGCAGGACAGACTTGTGAACTTACT ATTCCATTTGATAAGCAACTTTTGAGACTAGAACAATACCCACCAGATGCAAATCATGGA ATGCATATTCCAGCAGCAAGTGTCTACATTCAAAAGAGCACCTCAACATACACAATTCAT TCGAATGCCATCTTGGTCCTTCTACCAGTCCCCGATTTCTCAATGCCATTCAATGTGATT TGTTTCGTTGCCACCGCTTTTGCTCTAGTCTTCGGACCAATTCAACTTTATTCAACACTT TGGTTGGCACCGGTCGTCAAAAAGTCACAATGGGGGCGGAAAATTCATCGGGCGATTCTT TTGGCTATCATTGCATTCTGCCTATATGCTCATATGATGGATATCAATTTGAACGAAATT CGACGTGGTATCGAAACATATTTTGAAAAGCTCAACGAACTTAAGTGA
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Protein
MRILTSYLLLSILSSCHGLSENFDEKLTLSPVSKNELRVDFRFNSEREFNRKTESGDYLT FPRIIQELLSRYSVRKLTVTMAHGRWNLIGWGLPPQPSSPTGAQVFAEFEADQQEDADER MKFLVEALNGVLCTSISHINVITSPEFIVLKNHGGETSVHKRYGVLSGETTCTENLTRLR KLLACKENGISTLLHPSKLYNSVYHSSHLVVEQQCDKDQCNSKMEVGVSVVMRNPSQKTQ RHWSLADVFERKLGSQCKVARSSKIHVIGTTGEITTTDVKNLTTINGEEPFELYIPITDI SMKQSVVKAWSSQGGFEQKHGVLTVHITNDESASEIHVSQIIPYYVHLRYSKINWKCDKN GVPRIEKIFKNSKSLEAPTLLQYKMKLSAGQTCELTIPFDKQLLRLEQYPPDANHGMHIP AASVYIQKSTSTYTIHSNAILVLLPVPDFSMPFNVICFVATAFALVFGPIQLYSTLWLAP VVKKSQWGRKIHRAILLAIIAFCLYAHMMDINLNEIRRGIETYFEKLNELK
MRILTSYLLLSILSSCHGLSENFDEKLTLSPVSKNELRVDFRFNSEREFNRKTESGDYLT FPRIIQELLSRYSVRKLTVTMAHGRWNLIGWGLPPQPSSPTGAQVFAEFEADQQEDADER MKFLVEALNGVLFLKNHGGETSVHKRYGVLSGETTCTENLTRLRKLLACKENGISTLLHP SKLYNSVYHSSHLVVEQQCDKDQCNSKMEVGVSVVMRNPSQKTQRHWSLADVFERKLGSQ CKVARSSKIHVIGTTGEITTTDVKNLTTINGEEPFELYIPITDISMKQSVVKAWSSQGGF EQKHGVLTVHITNDESASEIHVSQIIPYYVHLRYSKINWKCDKNGVPRIEKIFKNSKSLE APTLLQYKMKLSAGQTCELTIPFDKQLLRLEQYPPDANHGMHIPAASVYIQKSTSTYTIH SNAILVLLPVPDFSMPFNVICFVATAFALVFGPIQLYSTLWLAPVVKKSQWGRKIHRAIL LAIIAFCLYAHMMDINLNEIRRGIETYFEKLNELK
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References |
Simmer F, Moorman C, van der Linden AM, Kuijk E, van den Berghe PV, Kamath RS, Fraser AG, Ahringer J, Plasterk RH
PLoS Biol.
(2003)
1
(1)
:E12
[PMID : 14551910]
Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals novel gene functions.
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Functional Descriptions |
F17C11.7
none available
|
Deletion Mutants |
|
In Situ |
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Expression |
Expression
db_name |
wbbt |
name |
def |
reliability |
expr_pattern |
paper |
WormAtlas |
WB |
WBbt:0005784
|
germ line |
"cell line which early in development becomes differentiated from the remaining somatic cell line, and alone has the potential to undergo meiosis and form gametes." [ISBN:0140512888] |
Enriched |
WBPaper00044760 : germline_specific
|
WBPaper00044760
|
|
|
WBGene00008918
Phenotype
Homology_paralog
|
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Phenotype |
Definition |
RNAi / Allele |
embryonic lethal
|
"Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die." [WB:cab, WB:WBPaper00000179, WB:WBPaper00004403, WB:WBPaper00004540, WB:WBPaper00004651, WB:WBPaper00004769, WB:WBPaper00005654, WB:WBPaper00024497, WB:WBPaper00024925, WB:WBPaper00025054]
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larval arrest
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"The developmental program of the animals halts at any larval stage and thus fails to reach adulthood. In C.elegans, this occurs anytime during L1-L4 stage." [WB:WBPaper00002958, WB:WBPerson2021]
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larval lethal
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"The animal dies at any time between hatching and onset to adulthood." [GO:0002119, WB:WBPerson712]
|
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lethal
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"Animals die prematurely at any stage of the life cycle." [WB:WBPaper00001109, WB:WBPerson2021]
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long
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"Animals are longer than control animals at the same developmental stage." [WB:cab, WB:cgc31]
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maternal sterile
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" Animals produce no or very few embryos as a result of experimental treatment. This is in contrast to sterility due to genetic perturbations (maternal effect sterility)." [WB:cab, WB:cgc5599, WB:cgc7141, WB:WBPerson557]
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organism morphology variant
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"Animals exhibit variations in the form, structure or composition of any part of their anatomy compared to control animals." [WB:cab, WB:WBPaper00004402, WB:WBPaper00004403, WB:WBPaper00004651, WB:WBPaper00005654, WB:WBPaper00006395]
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postembryonic development variant
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"Any variation in the progression of an animal over time, from hatching to adulthood, compared to control." [WB:WBPerson2021]
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slow growth
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"Any variation that causes a reduction in growth rate compared to control." [WB:cab, WB:WBPaper00004402, WB:WBPaper00004403, WB:WBPaper00004651, WB:WBPaper00004769, WB:WBPaper00005654, WB:WBPaper00006395, WB:WBPaper00024497, WB:WBPerson557]
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sterile progeny
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"Any variation that compromises the reproductive ability of the progeny of an animal." [WB:WBPerson2021, WB:WBPerson557]
|
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thin
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"Animals exhibit a reduced girth compared to a control animal of the same developmental stage." [WB:WBPerson712]
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Variant
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"Animals exhibit variations compared to a given control." [WB:WBPerson557]
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