JCEG ID JCEG216
Name gly-6      WormBase    NCBI Gene
Human Ortholog

GGDB:GALNT1 

OMIM:

GGDB Score E-val
GALNT13 464 e-132
GALNT1 463 e-132
GALNT12 370 e-104
GALNT6 365 e-102
GALNT5 363 e-102
GALNT11 359 e-101
GALNT2 358 e-100
GALNT10 358 e-100
GALNT4 356 e-100
GALNT14 353 3e-99
GALNT3 352 1e-98
GALNT15 313 6e-87
GALNT7 293 5e-81
GALNT8 283 8e-78
GALNT19 281 2e-77
GALNT9 281 2e-77
Option tblastn : Query Worm Protein, Subject GGDB mRNA, E-val < 0.00001
Family Name ppGalNAcT
Locus Tag H38K22.5
RNAi phenotype
phenotype WT
Microscope observation (Image)
COPAS (Image)

Normal

hsp-4::GFP (Image)
Sequence Features
Sequence CDS
Protein
References

Hagen FK, Nehrke K J. Biol. Chem. (1998) 273 (14) :8268-77 [PMID : 9525933] cDNA cloning and expression of a family of UDP-N-acetyl-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase sequence homologs from Caenorhabditis elegans.

Schwientek T, Bennett EP, Flores C, Thacker J, Hollmann M, Reis CA, Behrens J, Mandel U, Keck B, Schafer MA, Haselmann K, Zubarev R, Roepstorff P, Burchell JM, Taylor-Papadimitriou J, Hollingsworth MA, Clausen H J. Biol. Chem. (2002) 277 (25) :22623-38 [PMID : 11925450] Functional conservation of subfamilies of putative UDP-N-acetylgalactosamine:polypeptide N-acetylgalactosaminyltransferases in Drosophila, Caenorhabditis elegans, and mammals. One subfamily composed of l(2)35Aa is essential in Drosophila.

Wang H, Spang A, Sullivan MA, Hryhorenko J, Hagen FK Mol. Biol. Cell (2005) 16 (9) :4202-13 [PMID : 15987734] The terminal phase of cytokinesis in the Caenorhabditis elegans early embryo requires protein glycosylation.

Berninsone PM WormBook (2006) :1-22 [PMID : 18050430] Carbohydrates and glycosylation.

Lee W, Kim KR, Singaravelu G, Park BJ, Kim DH, Ahnn J, Yoo YJ Proteomics (2006) 6 (4) :1329-39 [PMID : 16404716] Alternative chaperone machinery may compensate for calreticulin/calnexin deficiency in Caenorhabditis elegans.

LeGendre JB, Campbell ZT, Kroll-Conner P, Anderson P, Kimble J, Wickens M J. Biol. Chem. (2012) 288 (4) :2532-45 [PMID : 23195953] RNA targets and specificity of Staufen, a double-stranded RNA-binding protein in Caenorhabditis elegans.

Bennett EP, Mandel U, Clausen H, Gerken TA, Fritz TA, Tabak LA Glycobiology (2012) 22 (6) :736-56 [PMID : 22183981] Control of mucin-type O-glycosylation: a classification of the polypeptide GalNAc-transferase gene family.

WormBase (WS254)

Functional Descriptions gly-6

Deletion Mutants gk350 ok1912
In Situ In Situ   
Expression Expression
db_name wbbt name def reliability expr_pattern paper WormAtlas
WB WBbt:0005063

gon_male_dtc posterior "Distal tip cell, inhibits meiosis in nearby germ cells, posterior." [ISBN:0-87969-307-X] Enriched WBPaper00048690 : hermaphrodite-Z1-Z4-daughter_enriched
WBPaper00048690
WB WBbt:0005064

gon_male_dtc anterior "Distal tip cell, inhibits meiosis in nearby germ cells, anterior" [ISBN:0-87969-307-X] Enriched WBPaper00048690 : hermaphrodite-Z1-Z4-daughter_enriched
WBPaper00048690
WB WBbt:0005733

hypodermis "epidermal layer" [WB:pws] Enriched WBPaper00037950 : hypodermis_embryo_SelectivelyEnriched, hypodermis_embryo_enriched
WBPaper00037950
WB WBbt:0006831

PVD "Neuron class of two interneurons with cell bodies situated laterally in the posterior body." [WB:Paper00000938] Enriched WBPaper00036375 : enriched_in_PVD_OLL
WBPaper00036375
WB WBbt:0006847

OLL "Neuron class of two neurons with ciliated endings in the lateral outer labial sensilla." [WB:Paper00000938] Enriched WBPaper00036375 : enriched_in_PVD_OLL
WBPaper00036375
WB WBbt:0007023

Z1.p "cell, posterior descendent of Z1." [WB:rynl] Enriched WBPaper00048690 : hermaphrodite-Z1-Z4-daughter_enriched
WBPaper00048690
WB WBbt:0007025

Z4.a "cell, anterior descendent of Z4." [WB:rynl] Enriched WBPaper00048690 : hermaphrodite-Z1-Z4-daughter_enriched
WBPaper00048690

WBGene00001631
Phenotype
Homology_paralog

Observed Observed and NOT Observed
Phenotype Definition RNAi / Allele


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