| JCEG ID |
JCEG195 |
| Name |
T09E11.9
WormBase
NCBI Gene
|
| Human Ortholog |
GGDB:GCNT4
OMIM:
OrthoList :
GCNT7
GCNT4
GCNT2
GCNT3
GCNT1
GCNT6
(Ensembl Compara)
GWAS Catalog
| STREAM | RAF | p-value | OR | BETA | CI | Study |
| DOWNSTREAM |
|
0.000004
|
0.0888
|
|
(unit increase)] |
23362303
|
|
Wu JH 2013-01-29 Circ Cardiovasc Genet
Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.
|
Option tblastn : Query Worm Protein, Subject GGDB mRNA, E-val < 0.00001
|
| Family Name |
b6GnT |
| Locus Tag |
T09E11.9
|
| RNAi phenotype |
|
phenotype
|
WT
|
|
Microscope observation (Image)
|
|
|
COPAS (Image)
|
Normal
|
|
hsp-4::GFP (Image)
|
|
|
| Sequence Features |
tm:soluble
gg_motif:M2
|
| Sequence |
CDS
atgagccgttcaacttcaaaaaaattgcaaaaatttacatgggttacaat
gttcttcgggactgttctactggtctattacctgatgttttcttcgaaaa
gtttatttggacgcaatgagcaaaattcgtatgctttgtataatttgaga
aatgaaaattatcaacgagaagcaattattaacgagttgcgacgtgattt
tgcaaaaatcgagtcaaaaattgagcatttttattcaaaaacttatcgtc
ggcggtcagaaaccgcacacgttgactgcggacgaatcctatccggtgac
aaggactatctgcaaactgtgtctggagaaaataggataccaatggtaga
aaacccgaaccccgacatgtcttgttccgcagttatggatagaattatac
cccatgatcatattttgagacctctgaagaatggagtagcattcgccaga
attgtctacaaggactatgagcttgttgagaagcaagtgcaaatgtccta
tcatcctcagaactcattttgcttcgcgattgataagaaggcgccaacga
gattcaagaatcagatgagagcaatggcagcgtgtcttccaaacgttttg
cttctacccgaccaagaaccaatcgactccaatggccataacgtcaatct
ggcacatctcaactgcctccgcgcgctgatcaataagcccggctggaact
atgcgatgctgctccagaatcatgatcttctcaccaaatctgtgtacgag
ctcgaacaagtttatgaatggcttggcggggcgaatgatgtggaactgct
gcctgaagctcagaggcttgatgaagagaatttcaagtgggatccaaggt
cgctgaaaatgtttccagatgaatcaaaagtggacgaaacgatattgaat
gagaagataaaattctcgaagggcggtgttcagggatcaatgtcacgggc
cgccgttgattggatgactcgaaaagtgaacttgtccacttacatagatc
aatggaatcagggaagatggggtgtggatgagatgctgatctccagtctg
caaatcagcgcgtttctcggaatgccgggacacttcacggatcaatgtct
caaggagggcaaggttactgattttattacaaggatggtgcaatggaatt
ttgaggatgaaagctactgtgcctctaaatacaaacgccacaatgtttgc
attctgggaattgaatatctgagatcggtcgcatcgtttccaactttgat
gtttaataagatgcttccaccctttgacaattccataatcgaatgtaccg
ctgagcttctctataatcgaacgttcatgggacaaaacgaccatccactg
gaggaggagtactacaaaaatatggttactgttctgtaccacaagcatca
caaggaacacaactatacattgaactgtgacccaaagtacacaagttggc
aaactaggcagttgccgttataa
|
Protein
MSRSTSKKLQKFTWVTMFFGTVLLVYYLMFSSKSLFGRNEQNSYALYNLRNENYQREAII
NELRRDFAKIESKIEHFYSKTYRRRSETAHVDCGRILSGDKDYLQTVSGENRIPMVENPN
PDMSCSAVMDRIIPHDHILRPLKNGVAFARIVYKDYELVEKQVQMSYHPQNSFCFAIDKK
APTRFKNQMRAMAACLPNVLLLPDQEPIDSNGHNVNLAHLNCLRALINKPGWNYAMLLQN
HDLLTKSVYELEQVYEWLGGANDVELLPEAQRLDEENFKWDPRSLKMFPDESKVDETILN
EKIKFSKGGVQGSMSRAAVDWMTRKVNLSTYIDQWNQGRWGVDEMLISSLQISAFLGMPG
HFTDQCLKEGKVTDFITRMVQWNFEDESYCASKYKRHNVCILGIEYLRSVASFPTLMFNK
MLPPFDNSIIECTAELLYNRTFMGQNDHPLEEEYYKNMVTVLYHKHHKEHNYTLNCDPKY
TSWQTRQLPL
|
| References |
|
| Functional Descriptions |
T09E11.9
none available
|
| Deletion Mutants |
|
| In Situ |
|
| Expression |
Expression
|
WBGene00011658
Phenotype
Homology_paralog
|
|
|
| Phenotype |
Definition |
RNAi / Allele |
|
embryonic lethal
|
"Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die." [WB:cab, WB:WBPaper00000179, WB:WBPaper00004403, WB:WBPaper00004540, WB:WBPaper00004651, WB:WBPaper00004769, WB:WBPaper00005654, WB:WBPaper00024497, WB:WBPaper00024925, WB:WBPaper00025054]
|
|
|
larval arrest
|
"The developmental program of the animals halts at any larval stage and thus fails to reach adulthood. In C.elegans, this occurs anytime during L1-L4 stage." [WB:WBPaper00002958, WB:WBPerson2021]
|
|
|
larval lethal
|
"The animal dies at any time between hatching and onset to adulthood." [GO:0002119, WB:WBPerson712]
|
|
|
maternal sterile
|
" Animals produce no or very few embryos as a result of experimental treatment. This is in contrast to sterility due to genetic perturbations (maternal effect sterility)." [WB:cab, WB:cgc5599, WB:cgc7141, WB:WBPerson557]
|
|
|
organism morphology variant
|
"Animals exhibit variations in the form, structure or composition of any part of their anatomy compared to control animals." [WB:cab, WB:WBPaper00004402, WB:WBPaper00004403, WB:WBPaper00004651, WB:WBPaper00005654, WB:WBPaper00006395]
|
|
|
postembryonic development variant
|
"Any variation in the progression of an animal over time, from hatching to adulthood, compared to control." [WB:WBPerson2021]
|
|
|
slow growth
|
"Any variation that causes a reduction in growth rate compared to control." [WB:cab, WB:WBPaper00004402, WB:WBPaper00004403, WB:WBPaper00004651, WB:WBPaper00004769, WB:WBPaper00005654, WB:WBPaper00006395, WB:WBPaper00024497, WB:WBPerson557]
|
|
|
sterile progeny
|
"Any variation that compromises the reproductive ability of the progeny of an animal." [WB:WBPerson2021, WB:WBPerson557]
|
|
|
Variant
|
"Animals exhibit variations compared to a given control." [WB:WBPerson557]
|
|