JCGG-STR028758:JCGGDB ID

JCGGDB Glycan Structure Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology (AIST)

Glycan Information

Glyco Tree get Image

Composition

Hex 5 HexNAc 4 Neu5Ac 1 dHex 1
Mass Value Search

Fuc 1 Gal 2 GlcNAc 4 Man 3 Neu5Ac 1
Structural Isomer Search

Descriptors Computed from Structure

InChIKey	HAKKMURXHOVGPF-CBYKEYACSA-N
InChI	InChI=1S/C79H131N5O58/c1-18-40(99)51(110)56(115)72(125-18)122-16-34-63(47(106)36(68(119)126-34)81-20(3)93)135-69-37(82-21(4)94)48(107)62(31(14-91)130-69)138-75-59(118)65(139-77-67(55(114)44(103)28(11-88)129-77)141-71-39(84-23(6)96)50(109)60(29(12-89)132-71)136-73-57(116)52(111)42(101)26(9-86)127-73)46(105)32(133-75)15-123-76-66(54(113)43(102)27(10-87)128-76)140-70-38(83-22(5)95)49(108)61(30(13-90)131-70)137-74-58(117)53(112)45(104)33(134-74)17-124-79(78(120)121)7-24(97)35(80-19(2)92)64(142-79)41(100)25(98)8-85/h18,24-77,85-91,97-119H,7-17H2,1-6H3,(H,80,92)(H,81,93)(H,82,94)(H,83,95)(H,84,96)(H,120,121)/t18-,24-,25+,26+,27+,28+,29+,30+,31+,32+,33+,34+,35+,36+,37+,38+,39+,40+,41+,42-,43+,44+,45-,46+,47+,48+,49+,50+,51+,52-,53-,54-,55-,56-,57+,58+,59-,60+,61+,62+,63+,64+,65-,66-,67-,68+,69-,70-,71-,72+,73-,74-,75-,76-,77+,79+/m0/s
SMILES	C[C@@H]1O[C@@H](OC[C@H]2O[C@@H](O)[C@H](NC(C)=O)[C@@H](O)[C@@H]2O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO[C@@]6(C[C@H](O)[C@@H](NC(C)=O)[C@@H](O6)[C@H](O)[C@H](O)CO)C(O)=O)[C@H](O)[C@H](O)[C@H]5O)[C@H](O)[C@H]4NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@H](O)[C@H](O)[C@H]5O)[C@H](O)[C@H]4NC(C)=O)[C@@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@@H](O)[C@H](O)[C@@H]1O

Mass

	Monoisotopic Mass	Average Mass
Underivatised Oligosaccharides	2077.7454	2078.9082
Permethylated Oligosaccharides	2582.3088	2583.8755
Peracetylated Oligosaccharides	3338.0623	3340.0261

Glycan Motifs

Motif ID	Structure / SubStructure Name	Note
JCGG-MOTIF1002	α1,6-fucosylated N-glycan core structure	Reducing Terminal
JCGG-MOTIF4091	Terminal N-Acetyllactosamine	NON-Reducing Terminal

ID History Deleted Version

JCGG-STR032480(2)

External Links

GMDB (MSⁿ)

GMDB ONS-000229

GlycomeDB (Structure)

GlycomeDB 7613 7613

KEGG (Structure)

KEGG G11102 G11102

CarbBank

CCSD : 46607

Title : Identification of .alpha.-fetoprotein-P4 sugar chain as .alpha. 2-6 monosialylated biantennary complex-type oligosaccharides with an exposed galactose on the mannose .alpha. 1-6 arm by two-dimensional extended agarose gel-lectin affinity electrophoresis

Authors : Taketa K; Fujii Y; Aoi T; Taga H; Nishi S

Info : Electrophoresis (1993) 14: 798-804

TAXID : 9606 Genus Species : man Scientific Name : Homo sapiens Other Data : serum Other Data : 2010-12-17

CCSD : 46612

Title : Characterization of E-PHA-reactive .alpha.-fetoprotein isoforms by two- dimensional lectin affinity electrophoresis

Authors : Taketa K; Fujii Y; Taga H

Info : Electrophoresis (1993) 14: 1333-1337

TAXID : 9606 Genus Species : man Scientific Name : Homo sapiens Other Data : cord serum Other Data : 2010-12-17

JCGGDB ID JCGG-STR028758

Glycan Information

External Links