JCGG-STR025471:JCGGDB ID

JCGGDB Glycan Structure Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology (AIST)

Glycan Information

Glyco Tree get Image

Composition

Hex 4 HexNAc 2 Neu5Ac 1
Mass Value Search

Gal 3 Glc 1 GlcNAc 2 Neu5Ac 1
Structural Isomer Search

Descriptors Computed from Structure

InChIKey	UIJXXXCOANRQRQ-AKAYIWBOSA-N
InChI	InChI=1S/C51H85N3O39/c1-12(60)52-23-15(63)4-51(50(79)80,93-42(23)26(65)16(64)5-55)82-11-22-28(67)33(72)37(76)48(88-22)90-40-20(9-59)86-46(25(31(40)70)54-14(3)62)92-43-29(68)21(87-49(38(43)77)91-41-18(7-57)83-44(78)35(74)34(41)73)10-81-45-24(53-13(2)61)30(69)39(19(8-58)85-45)89-47-36(75)32(71)27(66)17(6-56)84-47/h15-49,55-59,63-78H,4-11H2,1-3H3,(H,52,60)(H,53,61)(H,54,62)(H,79,80)/t15-,16+,17+,18+,19+,20+,21+,22+,23+,24+,25+,26+,27-,28-,29-,30+,31+,32-,33-,34+,35+,36+,37+,38+,39+,40+,41+,42+,43-,44+,45+,46-,47-,48-,49-,51+/m0/s
SMILES	CC(=O)N[C@@H]1[C@@H](O)C[C@@](OC[C@H]2O[C@@H](O[C@@H]3[C@@H](CO)O[C@@H](O[C@H]4[C@@H](O)[C@@H](CO[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)O[C@@H](O[C@@H]5[C@@H](CO)O[C@@H](O)[C@H](O)[C@H]5O)[C@@H]4O)[C@H](NC(C)=O)[C@H]3O)[C@H](O)[C@@H](O)[C@H]2O)(O[C@H]1[C@H](O)[C@H](O)CO)C(O)=O

Mass

	Monoisotopic Mass	Average Mass
Underivatised Oligosaccharides	1363.476	1364.2327
Permethylated Oligosaccharides	1713.8674	1714.9045
Peracetylated Oligosaccharides	2245.6978	2247.0154

Glycan Motifs

Motif ID	Structure / SubStructure Name	Note
JCGG-MOTIF3009	neolacto	Reducing Terminal
JCGG-MOTIF4064	Sialyl-6-Paragloboside	Reducing Terminal
JCGG-MOTIF4091	Terminal N-Acetyllactosamine	NON-Reducing Terminal

External Links

JCGG	JCGG JGD-000461 JGD-000461

GlycomeDB (Structure)

GlycomeDB 452 452

KEGG (Structure)

KEGG G00979 G00979

PACDB(Pathogen adhesion)

Pathogen:	Lactobacillus johnsonii (La1)
Glycan Name:	[ Not Binding]

Pathogen:	Rotavirus (Neuraminidase-sensitive; simian:SA11(P2/G3) / bovine:NCDV(P1/G6))
Glycan Name:	[ Not Binding]

Pathogen:	Helicobacter pylori
Glycan Name:	[ Not Binding]

CarbBank

CCSD : 1320

Title : Gangliosides of bovine buttermilk: isolation and characterization of a novel monosialoganglioside with a new branching structure

Authors : Takamizawa K; Iwamori M; Mutai M; Nagai Y

Info : J Biol Chem (1986) 261: 5625-5630

TAXID : 9913 Other Data : milk, buttermilk Other Data : 2010-12-17

CCSD : 22401

Title : Glycolipid binders for antibodies that immobilize human sperm

Authors : Isojima S; Hakomori S; Tsuji Y

Info : Jpn Kokai Tokkyo Koho (1989) : 1-7

Other Data : 2010-12-17

CCSD : 25663

Title : O-Acetylated gangliosides in bovine buttermilk. Characterization of 7- O-acetyl, 9-O-acetyl, and 7,9-di-O-acetyl GD3

Authors : Ren S; Scarsdale JN; Ariga T; Zhang Y; Klein RA; Hartmann R; Kushi Y; Egge H; Yu RK

Info : J Biol Chem (1992) 267: 12632-12638

Other Data : buttermilk Other Data : 2010-12-17

CCSD : 26406

Title : Human hepatoma gangliosides: occurrence of a novel I-type glycolipid with NeuAc.alpha.2-6Gal structure

Authors : Taki T; Rokukawa C; Kasama T; Handa S

Info : Cancer Res (1992) 52: 4805-4811

TAXID : 9606 Genus Species : man Scientific Name : Homo sapiens Other Data : liver Other Data : 2010-12-17

CCSD : 31756

Title : Characterization of binding of Gal.beta.4GlcNAc-specific lectins from Erythrina cristagalli and Erythrina corallodendron to glycosphingolipids. Detection, isolation and characterization of a novel glycosphingolipid of bovine buttermilk

Authors : Teneberg S; Aangstroem J; Jovall PA; Karlsson KA

Info : J Biol Chem (1994) 269: 8554-8563

TAXID : 9913 Other Data : milk, buttermilk Other Data : 2010-12-17

CCSD : 33110

Title : Human meconium gangliosides. Characterization of a novel 1-type ganglioside with the NeuAc.alpha.2-6Gal structure

Authors : Taki T; Rokukawa C; Kasama T; Kon K; Ando S; Abe T; Handa S

Info : J Biol Chem (1992) 267: 11811-11817

Other Data : 2010-12-17

JCGGDB ID JCGG-STR025471

Glycan Information

External Links