JCGG-STR024853:JCGGDB ID

JCGGDB Glycan Structure Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology (AIST)

Glycan Information

Glyco Tree get Image

Composition

Hex 3 HexNAc 2 Neu5Gc 1
Mass Value Search

Gal 2 GalNAc 2 Glc 1 Neu5Gc 1
Structural Isomer Search

Descriptors Computed from Structure

InChIKey	QCHPAOMWXAJAJO-KBPBLCAXSA-N
InChI	InChI=1S/C45H75N3O35/c1-11(56)46-22-27(64)25(62)15(5-50)74-40(22)80-35-19(9-54)77-43(32(69)38(35)83-45(44(71)72)3-13(58)21(48-20(60)10-55)37(82-45)24(61)14(59)4-49)81-36-23(47-12(2)57)41(75-16(6-51)26(36)63)78-34-18(8-53)76-42(31(68)29(34)66)79-33-17(7-52)73-39(70)30(67)28(33)65/h13-19,21-43,49-55,58-59,61-70H,3-10H2,1-2H3,(H,46,56)(H,47,57)(H,48,60)(H,71,72)/t13-,14+,15+,16+,17+,18+,19+,21+,22+,23+,24+,25-,26-,27+,28+,29+,30+,31+,32+,33+,34-,35-,36+,37+,38+,39+,40-,41-,42-,43-,45-/m0/s
SMILES	CC(=O)N[C@@H]1[C@@H](O)[C@@H](O)[C@@H](CO)O[C@H]1O[C@H]1[C@@H](CO)O[C@@H](O[C@H]2[C@@H](O)[C@@H](CO)O[C@@H](O[C@H]3[C@@H](CO)O[C@@H](O[C@@H]4[C@@H](CO)O[C@@H](O)[C@H](O)[C@H]4O)[C@H](O)[C@H]3O)[C@@H]2NC(C)=O)[C@H](O)[C@H]1O[C@@]1(C[C@H](O)[C@@H](NC(=O)CO)[C@@H](O1)[C@H](O)[C@H](O)CO)C(O)=O

Mass

	Monoisotopic Mass	Average Mass
Underivatised Oligosaccharides	1217.418	1218.0897
Permethylated Oligosaccharides	1539.778	1540.7078
Peracetylated Oligosaccharides	2015.6188	2016.7979

Glycan Motifs

Motif ID	Structure / SubStructure Name	Note
JCGG-MOTIF3003	ganglio	Reducing Terminal
JCGG-MOTIF4130	GalNAc(b1-4)[Neu5Gc(a2-3)]Gal(b1)	NON-Reducing Terminal

External Links

GlycoEpitope (Antiglycan Antibody)

GlycoEpitope GLPD-000135 GLPD-000135

Name:   IV³Neu5GcGg₅Cer
Description:   IV³Neu5GcGg₅Cer  IV⁴GalNAcIV³Neu5GcGg₄Cer
Reducing terminal:   (b-1)Cer

JCGG	JCGG JGD-000485 JGD-000485 Reducing terminal: (b-1)Cer

LipidBank (Spectral Data)

LipidBank GSG1231 GSG1231

Description: GalNAcb1-4(NeuGc2-3)Galb1-3GalNAcb1-4Galb1-4GlcCer
Reducing terminal: (b-)Cer

GlycomeDB (Structure)

GlycomeDB 3939 3939

KEGG (Structure)

KEGG G00791 G00791

CarbBank

CCSD : 1173

Title : A new ganglioside showing choleragenoid-binding activity in mouse spleen

Authors : Nakamura K; Suzuki M; Inagaki F; Yamakawa T; Suzuki A

Info : J Biochem (1987) 101: 825-835

TAXID : 10090 Other Data : spleen Other Data : 2010-12-17

CCSD : 15937

Title : Structural characterization of the new gangliosides in mouse spleen

Authors : Suzuki M; Nakamura K; Inagaki F; Hashimoto Y; Yamakawa T; Suzuki A

Info : Iyo Masu Kenkyukai Koenshu (1987) 12: 193-196

TAXID : 10090 Other Data : spleen Other Data : 2010-12-17

CCSD : 16073

Title : Genetic polymorphism of ganglioside expression in mouse organs

Authors : Nakamura K; Hashimoto Y; Yamakawa T; Suzuki A

Info : J Biochem (1988) 103: 201-208

TAXID : 10090 Other Data : 2010-12-17

CCSD : 20958

Title : Concanavalin A-stimulated expression of gangliosides with GalNAc.beta.1- 4(NeuAc.alpha.2-3)Gal.beta. structure in murine thymocytes

Authors : Horikawa K; Yamasaki M; Iwamori M; Nakakuma H; Takatsuki K; Nagai Y

Info : Glycoconj J (1991) 8: 354-360

Other Data : 2010-12-17

CCSD : 25260

Title : Ganglioside alterations in YAC-1 cells cultivated in serum- supplemented and serum-free growth medium

Authors : Muething J; Poertner A; Jaeger V

Info : Glycoconj J (1992) 9: 265-273

TAXID : 10090 Other Data : 2010-12-17

CCSD : 40453

Title : In situ accessibility of murine macrophage gangliosides

Authors : Macala LJ; Yohe HC

Info : Glycobiology (1995) 5: 67-75

TAXID : 10090 Other Data : macrophage Other Data : 2010-12-17

CCSD : 45480

Title : An improved method for preparation of perbenzoylated ganglioside- derived sialic acids and nanogram detection of N-acetyl- and N-glycolyl neuraminic acid by high performance liquid chromatography

Authors : Unland F; Muthing J

Info : Biomed Chromatogr (1992) 6: 155-159

Other Data : 2010-12-17

CCSD : 47174

Title : Structural studies of gangliosides from the YAC-1 mouse lymphoma cell line by immunological detection and fast atom bombardment mass spectrometry

Authors : Muething J; Peter-Katalinic J; Hanisch FG; Neumann U

Info : Glycoconj J (1991) 8: 414-423

TAXID : 10090 Other Data : lymphocyte, T cells Other Data : 2010-12-17

JCGGDB ID JCGG-STR024853

Glycan Information

External Links