JCGG-STR017454:JCGGDB ID

JCGGDB Glycan Structure Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology (AIST)

Glycan Information

Glyco Tree get Image

Composition

Hex 5 HexNAc 5 Neu5Ac 2 dHex 1
Mass Value Search

Fuc 1 Gal 2 GlcNAc 5 Man 3 Neu5Ac 2
Structural Isomer Search

Descriptors Computed from Structure

InChIKey	DTAKBBDGKWRFDS-FLRQSQSZSA-N
InChI	InChI=1S/C98H161N7O71/c1-23-52(125)65(138)70(143)89(156-23)152-19-43-77(61(134)47(84(147)157-43)101-26(4)116)167-86-49(103-28(6)118)62(135)76(40(18-113)161-86)170-92-73(146)81(172-94-83(69(142)57(130)37(15-110)160-94)174-88-51(105-30(8)120)64(137)75(39(17-112)163-88)169-91-72(145)67(140)59(132)42(165-91)22-155-98(96(150)151)10-32(122)46(100-25(3)115)80(176-98)54(127)34(124)12-107)78(171-85-48(102-27(5)117)60(133)55(128)35(13-108)158-85)44(166-92)20-153-93-82(68(141)56(129)36(14-109)159-93)173-87-50(104-29(7)119)63(136)74(38(16-111)162-87)168-90-71(144)66(139)58(131)41(164-90)21-154-97(95(148)149)9-31(121)45(99-24(2)114)79(175-97)53(126)33(123)11-106/h23,31-94,106-113,121-147H,9-22H2,1-8H3,(H,99,114)(H,100,115)(H,101,116)(H,102,117)(H,103,118)(H,104,119)(H,105,120)(H,148,149)(H,150,151)/t23-,31-,32-,33+,34+,35+,36+,37+,38+,39+,40+,41+,42+,43+,44+,45+,46+,47+,48+,49+,50+,51+,52+,53+,54+,55+,56+,57+,58-,59-,60+,61+,62+,63+,64+,65+,66-,67-,68-,69-,70-,71+,72+,73-,74+,75+,76+,77+,78+,79+,80+,81+,82-,83-,84+,85-,86-,87-,88-,89+,90-,91-,92-,93-,94+,97+,98+/m0/s
SMILES	C[C@@H]1O[C@@H](OC[C@H]2O[C@@H](O)[C@H](NC(C)=O)[C@@H](O)[C@@H]2O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO[C@@]6(C[C@H](O)[C@@H](NC(C)=O)[C@@H](O6)[C@H](O)[C@H](O)CO)C(O)=O)[C@H](O)[C@H](O)[C@H]5O)[C@H](O)[C@H]4NC(C)=O)[C@@H](O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4NC(C)=O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO[C@@]6(C[C@H](O)[C@@H](NC(C)=O)[C@@H](O6)[C@H](O)[C@H](O)CO)C(O)=O)[C@H](O)[C@H](O)[C@H]5O)[C@H](O)[C@H]4NC(C)=O)[C@@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@@H](O)[C@H](O)[C@@H]1O

Mass

	Monoisotopic Mass	Average Mass
Underivatised Oligosaccharides	2571.9202	2573.3611
Permethylated Oligosaccharides	3188.6089	3190.5435
Peracetylated Oligosaccharides	4042.2898	4044.6655

Glycan Motifs

Motif ID	Structure / SubStructure Name	Note
JCGG-MOTIF1004	Core fucose, bisecting GlcNAc and N-glycan core structure	Reducing Terminal

External Links

GlycomeDB (Structure)

GlycomeDB 2623 2623

KEGG (Structure)

KEGG G11357 G11357

CarbBank

CCSD : 5190

Title : The effect of a 'bisecting' N-acetylglucosaminyl group on the binding of biantennary, complex oligosaccharides to concanavalin A, Phaseolus vulgaris erythroagglutinin (E-PHA), and Ricinus communis agglutinin (RCA- 120) immobilized on agarose

Authors : Narasimhan S; Freed JC; Schachter H

Info : Carbohydr Res (1986) 149: 65-83

Other Data : 2010-12-17

CCSD : 7120

Title : Function and pathology of the sugar chains of human immunoglobulin G

Authors : Kobata A

Info : Glycobiology (1990) 1: 5-8

TAXID : 9606 Genus Species : man Scientific Name : Homo sapiens Other Data : 2010-12-17

CCSD : 8099

Title : Interaction of asparagine-linked oligosaccharides with an immobilized rice (Oryza sativa) lectin column

Authors : Poola I; Narasimhan S

Info : Biochem J (1988) 250: 117-124

Other Data : 2010-12-17

CCSD : 8110

Title : Synthetic studies on cell-surface glycan. Part 63. Stereoselective synthesis of a core glycoheptaose of bisected biantennary complex type glycan of glycoproteins

Authors : Yamazaki F; Nukada T; Ito Y; Sato S; Ogawa T

Info : Tetrahedron Lett (1989) 30: 4417-4420

Other Data : 2010-12-17

CCSD : 8111

Title : Possible role for peptide-oligosaccharide interactions in differential oligosaccharide processing at asparagine-107 of the light chain and asparagine-297 of the heavy chain in a monoclonal IgG1 kappa

Authors : Savvidou G; Klein M; Grey AA; Dorrington KJ; Carver JP

Info : Biochemistry (1984) 23: 3736-3740

Other Data : 2010-12-17

CCSD : 33972

Title : Effect of altered CH2-associated carbohydrate structure on the functional properties and in vivo fate of chimeric mouse-human immunoglobulin G1

Authors : Wright A; Morrison SL

Info : J Exp Med (1994) 180: 1087-1096

Other Data : 2010-12-17

CCSD : 37119

Title : IgG galactosylation-Its biological significance and pathology

Authors : Furukawa K; Kobata A

Info : Mol Immunol (1991) 28: 1333-1340

TAXID : 9606 Genus Species : man Scientific Name : Homo sapiens Other Data : blood serum Other Data : 2010-12-17

JCGGDB ID JCGG-STR017454

Glycan Information

External Links