JCGG-STR013751:JCGGDB ID

JCGGDB Glycan Structure Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology (AIST)

Glycan Information

Glyco Tree get Image

Composition

Hex 3 HexNAc 5
Mass Value Search

GlcNAc 5 Man 3
Structural Isomer Search

Descriptors Computed from Structure

InChIKey	MNWJVLHNHTWDPE-UVHZPMDKSA-N
InChI	InChI=1S/C58H97N5O41/c1-14(71)59-27-40(84)45(24(11-69)91-51(27)89)99-55-31(63-18(5)75)41(85)46(25(12-70)97-55)100-56-44(88)48(102-58-50(43(87)36(80)23(10-68)96-58)104-54-30(62-17(4)74)39(83)34(78)21(8-66)94-54)47(101-52-28(60-15(2)72)37(81)32(76)19(6-64)92-52)26(98-56)13-90-57-49(42(86)35(79)22(9-67)95-57)103-53-29(61-16(3)73)38(82)33(77)20(7-65)93-53/h19-58,64-70,76-89H,6-13H2,1-5H3,(H,59,71)(H,60,72)(H,61,73)(H,62,74)(H,63,75)/t19-,20-,21-,22-,23-,24-,25-,26-,27-,28-,29-,30-,31-,32-,33-,34-,35-,36-,37-,38-,39-,40-,41-,42+,43+,44+,45-,46-,47-,48-,49+,50+,51-,52+,53+,54+,55+,56+,57+,58-/m1/s
SMILES	CC(=O)N[C@H]1[C@H](O)O[C@H](CO)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4NC(C)=O)[C@@H](O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4NC(C)=O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4NC(C)=O)[C@@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@@H]1O

Mass

	Monoisotopic Mass	Average Mass
Underivatised Oligosaccharides	1519.5659	1520.4174
Permethylated Oligosaccharides	1883.9727	1885.116
Peracetylated Oligosaccharides	2401.7876	2403.2

Glycan Motifs

Motif ID	Structure / SubStructure Name	Note
JCGG-MOTIF1003	Bisecting GlcNAc and N-glycan core structure	Reducing Terminal

External Links

GMDB (MSⁿ)

GMDB ONA-000052 ONA-000052

JCGG	JCGG JGD-000828 JGD-000828

MDHPLCDB (HPLCⁿ)

MDHPLCDB 201.1 201.1

GlycomeDB (Structure)

GlycomeDB 2277 2277

KEGG (Structure)

KEGG G00019 G00019

SGCAL (Mass Identification)

SGCAL NG-022 NG-022

Description: GlcNAcb1-2Mana1-6(GlcNAcb1-4)(GlcNAcb1-2Mana1-3)Manb1-4GlcNAcb1-4GlcNAc

CarbBank

CCSD : 2838

Title : 1H-NMR Spectroscopic Characterization of Dansyl Glyco-asparagines Derived from Hen Egg White Glycoproteins

Authors : van Halbeek H; Vliegenthart JFG; Iwase H; Li SC; Li YT

Info : Glycoconj J (1985) 2: 235-253

TAXID : 9031 Other Data : egg Other Data : 2010-12-17

CCSD : 4637

Title : Control of glycoprotein synthesis. III. The purification by preparative high voltage paper electrophoresis in borate of glycopeptides containing high mannose and complex oligosaccharide chains linked to asparagine

Authors : Narasimhan S; Harpaz N; Longmore G; Carver JP; Grey AA; Schachter H

Info : J Biol Chem (1980) 255: 4876-4884

TAXID : 9031 Other Data : 2010-12-17

CCSD : 5056

Title : The effect of a 'bisecting' N-acetylglucosaminyl group on the binding of biantennary, complex oligosaccharides to concanavalin A, Phaseolus vulgaris erythroagglutinin (E-PHA), and Ricinus communis agglutinin (RCA- 120) immobilized on agarose

Authors : Narasimhan S; Freed JC; Schachter H

Info : Carbohydr Res (1986) 149: 65-83

Other Data : 2010-12-17

CCSD : 6445

Title : Interaction of asparagine-linked oligosaccharides with an immobilized rice (Oryza sativa) lectin column

Authors : Poola I; Narasimhan S

Info : Biochem J (1988) 250: 117-124

Other Data : 2010-12-17

CCSD : 7633

Title : Identification of terminal N-acetylglucosamine residues of highly branched asparagine-linked oligosaccharides as immunoreactive domains of a chicken heterophile antigenic determinant

Authors : Chechik BE; Fong M; Narasimhan S; Schachter H

Info : Mol Immunol (1987) 24: 765-771

TAXID : 9031 Other Data : 2010-12-17

CCSD : 7634

Title : Structural determinants of concanavalin A specificity for oligosaccharides

Authors : Baenziger JU; Fiete D

Info : J Biol Chem (1979) 254: 2400-2407

Other Data : 2010-12-17

CCSD : 7655

Title : Control of glycoprotein synthesis. Part VI. Product-identification and substrate-specificity studies of the GDP-L-fucose:2-acetamido-2-deoxy- rich fraction from porcine liver

Authors : Longmore GD; Schachter H

Info : Carbohydr Res (1982) 100: 365-392

Other Data : 2010-12-17

CCSD : 11716

Title : Control of glycoprotein synthesis. UDP-GlcNAc:glycopeptide .beta.4-N- acetylglucosaminyltransferase III, an enzyme in hen oviduct which adds GlcNAc in .beta.1-4 linkage to the .beta.-linked mannose of the trimannosyl core of N-glycosyl oligosaccharides

Authors : Narasimhan S

Info : J Biol Chem (1982) 257: 10235-10242

Other Data : 2010-12-17

CCSD : 24570

Title : Two-dimensional poly(acrylamide) electrophoresis of fluoresceinated glycopeptides. Resolution and structural characterization of ovalbumin glycans

Authors : Rago RP; Ramirez-Soto D; Poretz RD

Info : Carbohydr Res (1992) 236: 1-8

TAXID : 9031 Other Data : 2010-12-17

CCSD : 30809

Title : Structures of asparagine linked oligosaccharides of immunoglobulins

Authors : Matsuura F; Ohta M; Murakami K; Matsuki Y

Info : Glycoconj J (1993) 10: 202-213

TAXID : 93934 Other Data : egg yolk Other Data : 2010-12-17

CCSD : 34935

Title : Selective suppression of N-acetylglucosaminyltransferase III activity in a human hepatoblastoma cell line transfected with hepatitis B virus

Authors : Miyoshi E; Nishikawa A; Ihara Y; Hayashi N; Fusamoto H; Kamada T; Taniguchi N

Info : Cancer Res (1994) 54: 1854-1858

Other Data : 2010-12-17

JCGGDB ID JCGG-STR013751

Glycan Information

External Links