JCGG-STR009368:JCGGDB ID

JCGGDB Glycan Structure Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology (AIST)

Glycan Information

Glyco Tree get Image

Composition

Hex 4 HexNAc 4 Neu5Ac 1 dHex 1
Mass Value Search

Fuc 1 Gal 1 GlcNAc 4 Man 3 Neu5Ac 1
Structural Isomer Search

Descriptors Computed from Structure

InChIKey	YDESOZVQJQWHOL-AMDSVQNHSA-N
InChI	InChI=1S/C73H121N5O53/c1-17-38(92)49(103)53(107)67(116-17)113-15-32-58(46(100)34(63(110)117-32)75-19(3)86)125-65-36(77-21(5)88)47(101)57(29(13-84)121-65)127-69-55(109)60(44(98)30(123-69)14-114-70-61(51(105)41(95)26(10-81)119-70)129-64-35(76-20(4)87)45(99)40(94)25(9-80)118-64)128-71-62(52(106)42(96)27(11-82)120-71)130-66-37(78-22(6)89)48(102)56(28(12-83)122-66)126-68-54(108)50(104)43(97)31(124-68)16-115-73(72(111)112)7-23(90)33(74-18(2)85)59(131-73)39(93)24(91)8-79/h17,23-71,79-84,90-110H,7-16H2,1-6H3,(H,74,85)(H,75,86)(H,76,87)(H,77,88)(H,78,89)(H,111,112)/t17-,23-,24+,25+,26+,27+,28+,29+,30+,31+,32+,33+,34+,35+,36+,37+,38+,39+,40+,41+,42+,43-,44+,45+,46+,47+,48+,49+,50-,51-,52-,53-,54+,55-,56+,57+,58+,59+,60-,61-,62-,63+,64-,65-,66-,67+,68-,69-,70-,71+,73+/m0/s
SMILES	C[C@@H]1O[C@@H](OC[C@H]2O[C@@H](O)[C@H](NC(C)=O)[C@@H](O)[C@@H]2O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO[C@@]6(C[C@H](O)[C@@H](NC(C)=O)[C@@H](O6)[C@H](O)[C@H](O)CO)C(O)=O)[C@H](O)[C@H](O)[C@H]5O)[C@H](O)[C@H]4NC(C)=O)[C@@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@@H](O)[C@H](O)[C@@H]1O

Mass

	Monoisotopic Mass	Average Mass
Underivatised Oligosaccharides	1915.6926	1916.7657
Permethylated Oligosaccharides	2378.209	2379.6523
Peracetylated Oligosaccharides	3049.9778	3051.772

Glycan Motifs

Motif ID	Structure / SubStructure Name	Note
JCGG-MOTIF1002	α1,6-fucosylated N-glycan core structure	Reducing Terminal

External Links

GlycomeDB (Structure)

GlycomeDB 1870 1870

KEGG (Structure)

KEGG G00974 G00974

CarbBank

CCSD : 1760

Title : Structural study of the sugar chains of .alpha.-amylase produced ectopically in tumors

Authors : Yamashita K; Tachibana Y; Takeuchi T; Kobata A

Info : J Biochem (1981) 90: 1281-1289

Other Data : ovary ectopic tumor Other Data : 2010-12-17

CCSD : 5249

Title : The effect of a 'bisecting' N-acetylglucosaminyl group on the binding of biantennary, complex oligosaccharides to concanavalin A, Phaseolus vulgaris erythroagglutinin (E-PHA), and Ricinus communis agglutinin (RCA- 120) immobilized on agarose

Authors : Narasimhan S; Freed JC; Schachter H

Info : Carbohydr Res (1986) 149: 65-83

Other Data : 2010-12-17

CCSD : 8185

Title : Structural determinants of concanavalin A specificity for oligosaccharides

Authors : Baenziger JU; Fiete D

Info : J Biol Chem (1979) 254: 2400-2407

Other Data : 2010-12-17

CCSD : 8186

Title : Structural determinants of Ricinus communis agglutinin and toxin specificity for oligosaccharides

Authors : Baenziger JU; Fiete D

Info : J Biol Chem (1979) 254: 9795-9799

Other Data : 2010-12-17

CCSD : 35748

Title : Fractionation and structural assessment of oligosaccharides and glycopeptides by use of immobilized lectins

Authors : Osawa T; Tsuji T

Info : Ann Rev Biochem (1987) 56: 21-42

Other Data : 2010-12-17

CCSD : 46613

Title : Characterization of E-PHA-reactive .alpha.-fetoprotein isoforms by two- dimensional lectin affinity electrophoresis

Authors : Taketa K; Fujii Y; Taga H

Info : Electrophoresis (1993) 14: 1333-1337

TAXID : 9606 Genus Species : man Scientific Name : Homo sapiens Other Data : cord serum Other Data : 2010-12-17

JCGGDB ID JCGG-STR009368

Glycan Information

External Links