JCGG-STR009028:JCGGDB ID

JCGGDB Glycan Structure Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology (AIST)

Glycan Information

Glyco Tree get Image

Composition

Hex 5 HexNAc 3 dHex 2
Mass Value Search

Fuc 2 Gal 4 Glc 1 GlcNAc 3
Structural Isomer Search

Descriptors Computed from Structure

InChIKey	DAOMYAMWLFIDMG-KZTXIMJGSA-N
InChI	InChI=1S/C66H111N3O49/c1-14-30(80)39(89)45(95)61(101-14)117-55-41(91)32(82)19(6-70)105-65(55)113-50-23(10-74)107-58(27(36(50)86)67-16(3)77)100-13-26-35(85)54(116-60-29(69-18(5)79)38(88)51(25(12-76)109-60)114-66-56(42(92)33(83)20(7-71)106-66)118-62-46(96)40(90)31(81)15(2)102-62)48(98)64(110-26)111-49-24(11-75)108-59(28(37(49)87)68-17(4)78)115-53-34(84)21(8-72)104-63(47(53)97)112-52-22(9-73)103-57(99)44(94)43(52)93/h14-15,19-66,70-76,80-99H,6-13H2,1-5H3,(H,67,77)(H,68,78)(H,69,79)/t14-,15-,19+,20+,21+,22+,23+,24+,25+,26+,27+,28+,29+,30+,31+,32-,33-,34-,35-,36+,37+,38+,39+,40+,41-,42-,43+,44+,45-,46-,47+,48+,49+,50+,51+,52+,53-,54-,55+,56+,57+,58+,59-,60-,61-,62-,63-,64-,65-,66-/m0/s
SMILES	C[C@@H]1O[C@@H](O[C@@H]2[C@@H](O)[C@@H](O)[C@@H](CO)O[C@H]2O[C@H]2[C@H](O)[C@@H](NC(C)=O)[C@H](OC[C@H]3O[C@@H](O[C@H]4[C@H](O)[C@@H](NC(C)=O)[C@H](O[C@H]5[C@@H](O)[C@@H](CO)O[C@@H](O[C@H]6[C@H](O)[C@@H](O)[C@H](O)O[C@@H]6CO)[C@@H]5O)O[C@@H]4CO)[C@H](O)[C@@H](O[C@@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@H](O)[C@H](O)[C@H]5O[C@@H]5O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]5O)[C@H](O)[C@H]4NC(C)=O)[C@H]3O)O[C@@H]2CO)[C@@H](O)[C@H](O)[C@@H]1O

Mass

	Monoisotopic Mass	Average Mass
Underivatised Oligosaccharides	1729.6285	1730.5981
Permethylated Oligosaccharides	2150.0981	2151.4043
Peracetylated Oligosaccharides	2863.9138	2865.6045

Glycan Motifs

Motif ID	Structure / SubStructure Name	Note
JCGG-MOTIF3009	neolacto	Reducing Terminal
JCGG-MOTIF4062	Paragloboside	Reducing Terminal
JCGG-MOTIF4102	Blood Group H Type 2	NON-Reducing Terminal

External Links

GlycoEpitope (Antiglycan Antibody)

GlycoEpitope GLPD-000093 GLPD-000093

Name:   branched Type 2 chain H ceramide decasaccharide
Alias Name:   H₃ Glycolipid
Reducing terminal:   (b-1)Cer

JCGG	JCGG JGD-000599 JGD-000599 Reducing terminal: (b-1)Cer

LipidBank (Spectral Data)

LipidBank GSG1393 GSG1393

Description: Fuca1-2Galb1-4GlcNAcb1-3(Fuca1-2Galb1-4GlcNAcb1-6)Galb1-4GlcNAcb1-3Galb1-4GlcCer
Reducing terminal: (b-)Cer

GlycomeDB (Structure)

GlycomeDB 1839 1839

KEGG (Structure)

KEGG G00079 G00079

CarbBank

CCSD : 1730

Title : On neutral fucoglycolipids having long branch carbohydrate chains: H- active glycosphingolipids of human erythrocyte membranes

Authors : Watanabe K; Laine RA; Hakomori S

Info : Biochemistry (1975) 14: 2725-2733

TAXID : 9606 Genus Species : man Scientific Name : Homo sapiens Other Data : erythrocyte Other Data : 2010-12-17

CCSD : 1731

Title : Glycolipids of fetal, newborn, and adult erythrocytes: glycolipid pattern and structural study of H3-glycolipid from newborn erythrocytes

Authors : Fukuda MN; Levery SB

Info : Biochemistry (1983) 22: 5034-5040

TAXID : 9606 Genus Species : man Scientific Name : Homo sapiens Other Data : erythrocyte Other Data : 2010-12-17

CCSD : 2867

Title : Developmental control of the expression of two ten-sugar branched chain fucolipids in rat small intestine

Authors : Bouhours D; Bouhours JF

Info : Glycoconj J (1985) 2: 79-86

TAXID : 10116 Other Data : intestine Other Data : 2010-12-17

CCSD : 8605

Title : Glycosphingolipids in cellular interaction, differentiation, and oncogenesis

Authors : Hakomori SI

Info : Ann Rev Biochem (1981) 50: 733-764

Other Data : 2010-12-17

CCSD : 9306

Title : Carbohydrate antigen profiles of human erythroleukemia cell lines HEL and K562

Authors : Kannagi R; Papayannopoulou T; Nakamoto B; Cochran NA; Yokochi T; Stamatoyannopoulos G; Hakomori S

Info : Blood (1983) 62: 1230-1241

TAXID : 9606 Genus Species : man Scientific Name : Homo sapiens Other Data : 2010-12-17

CCSD : 11627

Title : Two monoclonal anticarbohydrate antibodies directed to glycosphingolipids with a lacto-N-glycosyl type II chain

Authors : Young WW (Jr); Portoukalian J; Hakomori S

Info : J Biol Chem (1981) 256: 10967-10972

Other Data : 2010-12-17

CCSD : 12387

Title : A new solvent system for the separation of neutral glycosphingolipids

Authors : Watanabe K; Arao Y

Info : J Lipid Res (1981) 22: 1020-1024

Other Data : 2010-12-17

CCSD : 13263

Title : Possible role of ceramide in defining structure and function of membrane glycolipids

Authors : Kannagi R; Nudelman E; Hakomori SI

Info : Proc Natl Acad Sci U S A (1982) 79: 3470-3474

Other Data : 2010-12-17

CCSD : 19315

Title : Human IgG3 monoclonal antibody directed to an unbranched repeating type 2 chain (Gal.beta.1-4GlcNAc.beta.1-3Gal.beta.1-4GlcNAc.beta.1-3Gal.beta.1-R) which is highly expressed in colonic and hepatocellular carcinoma

Authors : Miyake M; Kohno N; Nudelman ED; Hakomori S

Info : Cancer Res (1989) 49: 5689-5695

Other Data : 2010-12-17

CCSD : 25853

Title : Glycolipid antigens of human polymorphonuclear neutrophils and the inducible HL-60 myeloid leukemia line

Authors : Symington FW; Hedges DL; Hakomori S

Info : J Immunol (1985) 134: 2498-2506

TAXID : 9606 Genus Species : man Scientific Name : Homo sapiens Other Data : 2010-12-17

JCGGDB ID JCGG-STR009028

Glycan Information

External Links