JCGG-STR005993:JCGGDB ID

JCGGDB Glycan Structure Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology (AIST)

Glycan Information

Glyco Tree get Image

Composition

Hex 3 HexNAc 5 dHex 1
Mass Value Search

Fuc 1 GlcNAc 5 Man 3
Structural Isomer Search

Descriptors Computed from Structure

InChIKey	AURRYDBIZNMPFG-TWUOILGPSA-N
InChI	InChI=1S/C64H107N5O45/c1-15-34(81)45(92)47(94)61(100-15)98-14-28-52(43(90)29(56(97)101-28)65-16(2)76)110-60-33(69-20(6)80)44(91)50(25(11-74)106-60)111-62-49(96)53(39(86)27(108-62)13-99-63-54(46(93)38(85)24(10-73)105-63)113-58-31(67-18(4)78)41(88)36(83)22(8-71)103-58)112-64-55(114-59-32(68-19(5)79)42(89)37(84)23(9-72)104-59)48(95)51(26(12-75)107-64)109-57-30(66-17(3)77)40(87)35(82)21(7-70)102-57/h15,21-64,70-75,81-97H,7-14H2,1-6H3,(H,65,76)(H,66,77)(H,67,78)(H,68,79)(H,69,80)/t15-,21+,22+,23+,24+,25+,26+,27+,28+,29+,30+,31+,32+,33+,34+,35+,36+,37+,38+,39+,40+,41+,42+,43+,44+,45+,46-,47-,48-,49-,50+,51+,52+,53-,54-,55-,56+,57-,58-,59-,60-,61+,62-,63-,64+/m0/s
SMILES	C[C@@H]1O[C@@H](OC[C@H]2O[C@@H](O)[C@H](NC(C)=O)[C@@H](O)[C@@H]2O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@H](O)[C@@H]4O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4NC(C)=O)[C@@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@@H](O)[C@H](O)[C@@H]1O

Mass

	Monoisotopic Mass	Average Mass
Underivatised Oligosaccharides	1665.6238	1666.5604
Permethylated Oligosaccharides	2058.062	2059.3127
Peracetylated Oligosaccharides	2631.8667	2633.4175

Glycan Motifs

Motif ID	Structure / SubStructure Name	Note
JCGG-MOTIF1002	α1,6-fucosylated N-glycan core structure	Reducing Terminal

External Links

GMDB (MSⁿ)

GMDB ONA-0000ad ONA-0000ad

JCGG	JCGG JGD-000798 JGD-000798

GlycomeDB (Structure)

GlycomeDB 1549 1549

KEGG (Structure)

KEGG G10774 G10774

SGCAL (Mass Identification)

SGCAL NG-036 NG-036

Description: GlcNAcb1-2Mana1-6(GlcNAcb1-4(GlcNAcb1-2)Mana1-3)Manb1-4GlcNAcb1-4(Fuca1-6)GlcNAc

CarbBank

CCSD : 5095

Title : The effect of a 'bisecting' N-acetylglucosaminyl group on the binding of biantennary, complex oligosaccharides to concanavalin A, Phaseolus vulgaris erythroagglutinin (E-PHA), and Ricinus communis agglutinin (RCA- 120) immobilized on agarose

Authors : Narasimhan S; Freed JC; Schachter H

Info : Carbohydr Res (1986) 149: 65-83

Other Data : 2010-12-17

CCSD : 7803

Title : Rous sarcoma virus-transformed baby hamster kidney cells express higher levels of asparagine-linked tri- and tetraantennary glycopeptides containing [GlcNAc-.beta.(1,6)Man-.alpha.(1,6)Man] and poly-N-acetyllactosamine sequences than baby hamster kidney cells

Authors : Pierce M; Arango J

Info : J Biol Chem (1986) 261: 10772-10777

Other Data : BHK cells Other Data : 2010-12-17

CCSD : 15335

Title : Recognition of oligosaccharide substrates by (N- acetylglucosaminyl)transferase-V

Authors : Srivastava OP; Hindsgaul O; Shoreibah M; Pierce M

Info : Carbohydr Res (1988) 179: 137-161

Other Data : 2010-12-17

CCSD : 18933

Title : Increased UDP-G1cNAc:.alpha.-mannoside .beta.(1-4) N- acetylglucosaminyltransferase activity during chick embryo development

Authors : Ogier-Denis E; Bauvy C; Moutsita R; Aubery M; Codogno P

Info : Biochim Biophys Acta (1990) 1054: 149-153

Other Data : 2010-12-17

CCSD : 41732

Title : Site-specific characterization of glycoprotein carbohydrates by exoglycosides digestion and laser desorption mass spectrometry

Authors : Sutton CW; O'Neill JA; Cottrell JS

Info : Anal Biochem (1994) 218: 34-46

TAXID : 10029 Other Data : CHO cells Other Data : 2010-12-17

CCSD : 45824

Title : Control of branching during the biosynthesis of asparagine-linked oligosaccharides

Authors : Schachter H; Narasimhan S; Gleeson P; Vella G

Info : Can J Biochem Cell Biol (1983) 61: 1049-1066

Other Data : 2010-12-17

JCGGDB ID JCGG-STR005993

Glycan Information

External Links