JCGG-STR002675:JCGGDB ID

JCGGDB Glycan Structure Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology (AIST)

Glycan Information

Glyco Tree get Image

Composition

Hex 6 HexNAc 5 dHex 1
Mass Value Search

Fuc 1 Gal 3 GlcNAc 5 Man 3
Structural Isomer Search

Descriptors Computed from Structure

InChIKey	XOPIJUCCPKKDTH-RENZMZARSA-N
InChI	InChI=1S/C82H137N5O60/c1-18-40(102)51(113)56(118)76(127-18)125-17-34-67(46(108)35(71(124)128-34)83-19(2)97)140-73-37(85-21(4)99)48(110)65(31(14-95)134-73)144-80-61(123)68(45(107)33(138-80)16-126-81-69(55(117)44(106)27(10-91)132-81)146-74-38(86-22(5)100)49(111)63(29(12-93)135-74)142-78-58(120)53(115)42(104)25(8-89)130-78)145-82-70(147-75-39(87-23(6)101)50(112)64(30(13-94)136-75)143-79-59(121)54(116)43(105)26(9-90)131-79)60(122)66(32(15-96)137-82)139-72-36(84-20(3)98)47(109)62(28(11-92)133-72)141-77-57(119)52(114)41(103)24(7-88)129-77/h18,24-82,88-96,102-124H,7-17H2,1-6H3,(H,83,97)(H,84,98)(H,85,99)(H,86,100)(H,87,101)/t18-,24+,25+,26+,27+,28+,29+,30+,31+,32+,33+,34+,35+,36+,37+,38+,39+,40+,41-,42-,43-,44+,45+,46+,47+,48+,49+,50+,51+,52-,53-,54-,55-,56-,57+,58+,59+,60-,61-,62+,63+,64+,65+,66+,67+,68-,69-,70-,71+,72-,73-,74-,75-,76+,77-,78-,79-,80-,81-,82+/m0/s
SMILES	C[C@@H]1O[C@@H](OC[C@H]2O[C@@H](O)[C@H](NC(C)=O)[C@@H](O)[C@@H]2O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@H](O)[C@H](O)[C@H]5O)[C@H](O)[C@H]4NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@@H](O[C@@H]6O[C@H](CO)[C@H](O)[C@H](O)[C@H]6O)[C@H](O)[C@H]5NC(C)=O)[C@H](O)[C@@H]4O[C@@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@H](O)[C@H](O)[C@H]5O)[C@H](O)[C@H]4NC(C)=O)[C@@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@@H](O)[C@H](O)[C@@H]1O

Mass

	Monoisotopic Mass	Average Mass
Underivatised Oligosaccharides	2151.7822	2152.9875
Permethylated Oligosaccharides	2670.3613	2671.9817
Peracetylated Oligosaccharides	3496.1201	3498.1802

Glycan Motifs

Motif ID	Structure / SubStructure Name	Note
JCGG-MOTIF1002	α1,6-fucosylated N-glycan core structure	Reducing Terminal
JCGG-MOTIF4091	Terminal N-Acetyllactosamine	NON-Reducing Terminal

External Links

GMDB (MSⁿ)

GMDB ONG-00004c ONG-00004c

JCGG	JCGG JGD-000756 JGD-000756

GlycomeDB (Structure)

GlycomeDB 1246 1246

KEGG (Structure)

KEGG G10803 G10803

SGCAL (Mass Identification)

SGCAL NG-016 NG-016

Description: Galb1-4GlcNAcb1-2Mana1-6(Galb1-4GlcNAcb1-4(Galb1-4GlcNAcb1-2)Mana1-3)Manb1-4GlcNAcb1-4(Fuca1-6)GlcNAc

CarbBank

CCSD : 7480

Title : Altered glycosylation of human chorionic gonadotropin decreases its hormonal activity as determined by cyclic-adenosine 3',5'-monophosphate production in MA-10 cells

Authors : Amano J; Nishimura R; Sato S; Kobata A

Info : Glycobiology (1990) 1: 45-50

TAXID : 9606 Genus Species : man Scientific Name : Homo sapiens Other Data : urine Other Data : 2010-12-17

CCSD : 7849

Title : Control of glycoprotein synthesis. Bovine milk UDPgalactose:N- acetylglucosamine 4-.beta.-galactosyltransferase catalyzes the preferential transfer of galactose to the GlcNAc.beta.1,2Man.alpha.1,3-branch of both bisected and nonbisected complex biantennary asparagine-linked oligosaccharides

Authors : Narasimhan S; Freed JC; Schachter H

Info : Biochemistry (1985) 24: 1694-1700

Other Data : 2010-12-17

CCSD : 7850

Title : Structural requirements for the binding of glycopeptides to immobilized Vicia faba (fava) lectin

Authors : Katagiri Y; Yamamoto K; Tsuji T; Osawa T

Info : Carbohydr Res (1984) 129: 257-265

Other Data : 2010-12-17

CCSD : 22534

Title : Novel transferrins useful as markers for liver cancer diagnosis

Authors : Kobata A; Yamashita K

Info : Jpn Kokai Tokkyo Koho (1990) : 1-12

Other Data : 2010-12-17

CCSD : 25746

Title : Structures, function, and transformational changes of the sugar chains of glycohormones

Authors : Kobata A

Info : J Cell Biochem (1988) 37: 79-90

TAXID : 9606 Genus Species : man Scientific Name : Homo sapiens Other Data : urine Other Data : 2010-12-17

CCSD : 41490

Title : Characterization of glycoproteins and their associated oligosaccharides through the use of endoglycosidases

Authors : Maley F; Trimble RB; Tarentino AL; Plummer TH

Info : Anal Biochem (1989) 180: 195-204

Other Data : 2010-12-17

JCGGDB ID JCGG-STR002675

Glycan Information

External Links