JCEG ID |
JCEG211 |
Name |
C18G1.3
WormBase
NCBI Gene
|
Human Ortholog |
GGDB:GCNT2
OMIM:
OrthoList :
B4GAT1
(InParanoid)
Option tblastn : Query Worm Protein, Subject GGDB mRNA, E-val < 0.00001
|
Family Name |
iGnT orthologs |
Locus Tag |
C18G1.3
|
RNAi phenotype |
phenotype
|
WT
|
Microscope observation (Image)
|
|
COPAS (Image)
|
Normal
|
hsp-4::GFP (Image)
|
|
|
Sequence Features |
tm:soluble
gg_motif:M1, M2, M3, M4
kr:Detected
dxd:Detected
|
Sequence |
CDS
atgagaaatattgcaagaaaaggtgccaaatcggatattcatttcattgt cgatggtgatatgataatgagtgatggatttgcggaaaagattaaaccaa ttgcaaatcaaattgttgatgggaaaaacaaaaatgtattggttgttaga agatttgaaacaaatgaaacgacaataccccacaaccatatagaattgaa aaatgcaattgaaaataaacaagtcttccaatttcatcacagatttttct ttgctgggcataaaatttcaaatatttcacactggtttgcggtttccaat gaaaccgacgaaattactgcttgggaaataccttactcgagcagcttatg ggaagttcaagtgattcttcatcgtaacgacttgtacaatgcggattact ttccagcgagaatcaaggttatgcagtcattggtgtacagcctgtgcaga gccaactatacgttcaacctcctatcacacgttttcaacgtgcacaaagg aatcaaattaggcgatactaacttctcaaaatccgttatagcacactcta agagaaatggaagaaatagcctatga
atgaaaattaaaattgttctttctcgagcacgtaactttgccgtctctgt aattgttgccggttttttctgtatttcatatctttcatccgatcgtcaat tgcatgcatacaatcccaaatttgccctctctaatgaaactagcatagat catgttataatagacactacaatgatgaataatgaatattgtgtgggtta taattttttggaagctacagaaagtttccgagaagatggacttgaaccag taacactagcagttcatggtactgcagaaatgatggaaatgatagaaaat aagcctgagaactgggatgggcctatatcatttggattgtttattgattt tcattctagacaaattctggattacgtcgctaaggtttatagctgcgatg aggagtttcagaaaaaggttaccgtacactttgcattccgtctatcaccc tttcaaactagctgcccacaaatcaaagtctcaccgtcaactctcgaatg tggcgagttcctctccaacagaaaaaagtttcgacgtgctgtaggcgact catttcaattgtacccaagtaacttgatgagaaatattgcaagaaaaggt gccaaatcggatattcatttcattgtcgatggtgatatgataatgagtga tggatttgcggaaaagattaaaccaattgcaaatcaaattgttgatggga aaaacaaaaatgtattggttgttagaagatttgaaacaaatgaaacgaca ataccccacaaccatatagaattgaaaaatgcaattgaaaataaacaagt cttccaatttcatcacagatttttctttgctgggcataaaatttcaaata tttcacactggtttgcggtttccaatgaaaccgacgaaattactgcttgg gaaataccttactcgagcagcttatgggaagttcaagtgattcttcatcg taacgacttgtacaatgcggattactttccagcgagaatcaaggttatgc agtcattggtgtacagcctgtgcagagccaactatacgttcaacctccta tcacacgttttcaacgtgcacaaaggaatcaaattaggcgatactaactt ctcaaaatccgttatagcacactctaagagaaatggaagaaataggtga
atgaatattgtgtgggttataattttttggaagctacagaaaggcatttt ccgagaagatggacttgaaccagtaacactagcagttcatggtactgcag aaatgatggaaatgatagaaaataagcctgagaactgggatgggcctata tcatttggattgtttattgattttcattctagacaaattctggattacgt cgctaaggtttatagctgcgatgaggagtttcagaaaaaggttaccgtac actttgcattccgtctatcaccctttcaaactagctgcccacaaatcaaa gtctcaccgtcaactctcgaatgtggcgagttcctctccaacagaaaaaa gtttcgacgtgctgtaggcgactcatttcaattgtacccaagtaacttga tgagaaatattgcaagaaaaggtgccaaatcggatattcatttcattgtc gatggtgatatgataatgagtgatggatttgcggaaaagattaaaccaat tgcaaatcaaattgttgatgggaaaaacaaaaatgtattggttgttagaa gatttgaaacaaatgaaacgacaataccccacaaccatatagaattgaaa aatgcaattgaaaataaacaagtcttccaatttcatcacagatttttctt tgctgggcataaaatttcaaatatttcacactggtttgcggtttccaatg aaaccgacgaaattactgcttgggaaataccttactcgagcagcttatgg gaagttcaagtgattcttcatcgtaacgacttgtacaatgcggattactt tccagcgagaatcaaggttatgcagtcattggtgtacagcctgtgcagag ccaactatacgttcaacctcctatcacacgttttcaacgtgcacaaagga atcaaattaggcgatactaacttctcaaaatccgttatagcacactctaa gagaaatggaagaaatagcgaactccaggatacatacccagatacgttgg atagatgcggtcaatttgtaatgtaa
|
Protein
MRNIARKGAKSDIHFIVDGDMIMSDGFAEKIKPIANQIVDGKNKNVLVVRRFETNETTIP HNHIELKNAIENKQVFQFHHRFFFAGHKISNISHWFAVSNETDEITAWEIPYSSSLWEVQ VILHRNDLYNADYFPARIKVMQSLVYSLCRANYTFNLLSHVFNVHKGIKLGDTNFSKSVI AHSKRNGRNSL
MKIKIVLSRARNFAVSVIVAGFFCISYLSSDRQLHAYNPKFALSNETSIDHVIIDTTMMN NEYCVGYNFLEATESFREDGLEPVTLAVHGTAEMMEMIENKPENWDGPISFGLFIDFHSR QILDYVAKVYSCDEEFQKKVTVHFAFRLSPFQTSCPQIKVSPSTLECGEFLSNRKKFRRA VGDSFQLYPSNLMRNIARKGAKSDIHFIVDGDMIMSDGFAEKIKPIANQIVDGKNKNVLV VRRFETNETTIPHNHIELKNAIENKQVFQFHHRFFFAGHKISNISHWFAVSNETDEITAW EIPYSSSLWEVQVILHRNDLYNADYFPARIKVMQSLVYSLCRANYTFNLLSHVFNVHKGI KLGDTNFSKSVIAHSKRNGRNR
MNIVWVIIFWKLQKGIFREDGLEPVTLAVHGTAEMMEMIENKPENWDGPISFGLFIDFHS RQILDYVAKVYSCDEEFQKKVTVHFAFRLSPFQTSCPQIKVSPSTLECGEFLSNRKKFRR AVGDSFQLYPSNLMRNIARKGAKSDIHFIVDGDMIMSDGFAEKIKPIANQIVDGKNKNVL VVRRFETNETTIPHNHIELKNAIENKQVFQFHHRFFFAGHKISNISHWFAVSNETDEITA WEIPYSSSLWEVQVILHRNDLYNADYFPARIKVMQSLVYSLCRANYTFNLLSHVFNVHKG IKLGDTNFSKSVIAHSKRNGRNSELQDTYPDTLDRCGQFVM
|
References |
|
Functional Descriptions |
C18G1.3
none available
|
Deletion Mutants |
|
In Situ |
|
Expression |
Expression
db_name |
wbbt |
name |
def |
reliability |
expr_pattern |
paper |
WormAtlas |
WB |
WBbt:0005784
|
germ line |
"cell line which early in development becomes differentiated from the remaining somatic cell line, and alone has the potential to undergo meiosis and form gametes." [ISBN:0140512888] |
Enriched |
WBPaper00044760 : germline_specific
|
WBPaper00044760
|
|
|
WBGene00015982
Phenotype
Homology_paralog
|
|
Phenotype |
Definition |
RNAi / Allele |
embryonic lethal
|
"Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die." [WB:cab, WB:WBPaper00000179, WB:WBPaper00004403, WB:WBPaper00004540, WB:WBPaper00004651, WB:WBPaper00004769, WB:WBPaper00005654, WB:WBPaper00024497, WB:WBPaper00024925, WB:WBPaper00025054]
|
|
larval arrest
|
"The developmental program of the animals halts at any larval stage and thus fails to reach adulthood. In C.elegans, this occurs anytime during L1-L4 stage." [WB:WBPaper00002958, WB:WBPerson2021]
|
|
larval lethal
|
"The animal dies at any time between hatching and onset to adulthood." [GO:0002119, WB:WBPerson712]
|
|
maternal sterile
|
" Animals produce no or very few embryos as a result of experimental treatment. This is in contrast to sterility due to genetic perturbations (maternal effect sterility)." [WB:cab, WB:cgc5599, WB:cgc7141, WB:WBPerson557]
|
|
organism morphology variant
|
"Animals exhibit variations in the form, structure or composition of any part of their anatomy compared to control animals." [WB:cab, WB:WBPaper00004402, WB:WBPaper00004403, WB:WBPaper00004651, WB:WBPaper00005654, WB:WBPaper00006395]
|
|
postembryonic development variant
|
"Any variation in the progression of an animal over time, from hatching to adulthood, compared to control." [WB:WBPerson2021]
|
|
slow growth
|
"Any variation that causes a reduction in growth rate compared to control." [WB:cab, WB:WBPaper00004402, WB:WBPaper00004403, WB:WBPaper00004651, WB:WBPaper00004769, WB:WBPaper00005654, WB:WBPaper00006395, WB:WBPaper00024497, WB:WBPerson557]
|
|
sterile progeny
|
"Any variation that compromises the reproductive ability of the progeny of an animal." [WB:WBPerson2021, WB:WBPerson557]
|
|
Variant
|
"Animals exhibit variations compared to a given control." [WB:WBPerson557]
|
|