| JCEG ID |
JCEG209 |
| Name |
F22F7.6
WormBase
NCBI Gene
|
| Human Ortholog |
GGDB:GCNT2
OMIM:
OrthoList :
B4GAT1
(InParanoid)
Option tblastn : Query Worm Protein, Subject GGDB mRNA, E-val < 0.00001
|
| Family Name |
iGnT orthologs |
| Locus Tag |
F22F7.6
|
| RNAi phenotype |
|
phenotype
|
WT
|
|
Microscope observation (Image)
|
|
|
COPAS (Image)
|
|
|
hsp-4::GFP (Image)
|
|
|
| Sequence Features |
kr:Detected
tm:soluble
dxd:Detected
gg_motif:M1, M3, M4
|
| Sequence |
CDS
atgtacgaagatcagtactgcgtggggtataattttctggaaggaacagg
agactttcgagaagacggtctagaacctatcaccctggcatcccatgcca
cttcagatatgatgttaactctggaaaaaatgacctcaatgtgggatgga
cctatatcagttgggatatttattgattttcactctagtcaagctctgga
gtatctcgcagaagtgcacagatgtgatgaggagttcaggaagaagatga
caattcactttgcaatccgtcagtcagcattccaacaaacttgcccaaaa
attcaaattccagcttcagacagaacttgctggaagttcagagcggatca
atcctacctccgaagccatctgtcaggacccttccaactatatccgagca
accttatgagaaatttggctcgccagggagccaagtcggatattcatttt
attatggatgcagatatgattgttagtgagggattcgcgcggaaactcaa
aaaagtggcaaatgagatgatcgacggaaaaagtaaaaaagtattggcaa
ttcgaagattcgaatcggttaatggaacttatttgcctagaactcacttt
gagttgaagcaatctatggcttattccaaaaccttcgaattccaccatcg
cttcttcccacaaggccatcacattgagcatttagagcagtggtttgaag
tttccaagcagtcaacttcagtgagcacgatggaaattccttttgccgga
tatgaatgggaagttcaagtaattcttcaccgtaacgacccctataacgc
ggcctatttcccgtccagaatcaaagttatgcactctctgatttacgccc
tttgtcgtgctggttacacgtttcatgttccgtcacacgttttcgatgtt
catgaagggattaagcatactaatacaatttattcgaaagccacaattgc
tcatcaggaagcttatgcgatggacatagccggagccagatatgtcagag
aaatggacgaaaagtacccggacactttggacaagtgtggaagattcaag
atgtattag
atgtacgaagatcagtactgcgtggggtataattttctggaaggaacagg
agactttcgagaagacggtctagaacctatcaccctggcatcccatgcca
cttcagatatgatgttaactctggaaaaaatgacctcaatgtgggatgga
cctatatcagttgggatatttattgattttcactctagtcaagctctgga
gtatctcgcagaagtgcacagatgtgatgaggagttcaggaagaagatga
caattcactttgcaatccgtcagtcagcattccaacaaacttgcccaaaa
attcaaattccagcttcagacagaacttgctggaagttcagagcggatca
atcctacctccgaagccatctgtcaggacccttccaactatatccgagca
accttatgagaaatttggctcgccagggagccaagtcggatattcatttt
attatggatgcagatatgattgttagtgagggattcgcgcggaaactcaa
aaaagtggcaaatgagatgatcgacggaaaaagtaaaaaagtattggcaa
ttcgaagattcgaatcggttaatggaacttatttgcctagaactcacttt
gagttgaagcaatctatggcttattccaacggatatgaatgggaagttca
agtaattcttcaccgtaacgacccctataacgcggcctatttcccgtcca
gaatcaaagttatgcactctctgatttacgccctttgtcgtgctggttac
acgtttcatgttccgtcacacgttttcgatgttcatgaagggattaagca
tactaatacaatttattcgaaagccacaattgctcatcaggaagcttatg
cgatggacatagccggagccagatatgtcagagaaatggacgaaaagtac
ccggacactttggacaagtgtggaagattcaagatgtattag
|
Protein
MYEDQYCVGYNFLEGTGDFREDGLEPITLASHATSDMMLTLEKMTSMWDGPISVGIFIDF
HSSQALEYLAEVHRCDEEFRKKMTIHFAIRQSAFQQTCPKIQIPASDRTCWKFRADQSYL
RSHLSGPFQLYPSNLMRNLARQGAKSDIHFIMDADMIVSEGFARKLKKVANEMIDGKSKK
VLAIRRFESVNGTYLPRTHFELKQSMAYSKTFEFHHRFFPQGHHIEHLEQWFEVSKQSTS
VSTMEIPFAGYEWEVQVILHRNDPYNAAYFPSRIKVMHSLIYALCRAGYTFHVPSHVFDV
HEGIKHTNTIYSKATIAHQEAYAMDIAGARYVREMDEKYPDTLDKCGRFKMY
MYEDQYCVGYNFLEGTGDFREDGLEPITLASHATSDMMLTLEKMTSMWDGPISVGIFIDF
HSSQALEYLAEVHRCDEEFRKKMTIHFAIRQSAFQQTCPKIQIPASDRTCWKFRADQSYL
RSHLSGPFQLYPSNLMRNLARQGAKSDIHFIMDADMIVSEGFARKLKKVANEMIDGKSKK
VLAIRRFESVNGTYLPRTHFELKQSMAYSNGYEWEVQVILHRNDPYNAAYFPSRIKVMHS
LIYALCRAGYTFHVPSHVFDVHEGIKHTNTIYSKATIAHQEAYAMDIAGARYVREMDEKY
PDTLDKCGRFKMY
|
| References |
|
| Functional Descriptions |
F22F7.6
none available
|
| Deletion Mutants |
|
| In Situ |
|
| Expression |
Expression
|
WBGene00017723
Phenotype
Homology_paralog
|
|
|
| Phenotype |
Definition |
RNAi / Allele |
|
embryonic lethal
|
"Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die." [WB:cab, WB:WBPaper00000179, WB:WBPaper00004403, WB:WBPaper00004540, WB:WBPaper00004651, WB:WBPaper00004769, WB:WBPaper00005654, WB:WBPaper00024497, WB:WBPaper00024925, WB:WBPaper00025054]
|
|
|
larval arrest
|
"The developmental program of the animals halts at any larval stage and thus fails to reach adulthood. In C.elegans, this occurs anytime during L1-L4 stage." [WB:WBPaper00002958, WB:WBPerson2021]
|
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|
larval lethal
|
"The animal dies at any time between hatching and onset to adulthood." [GO:0002119, WB:WBPerson712]
|
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lethal
|
"Animals die prematurely at any stage of the life cycle." [WB:WBPaper00001109, WB:WBPerson2021]
|
|
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maternal sterile
|
" Animals produce no or very few embryos as a result of experimental treatment. This is in contrast to sterility due to genetic perturbations (maternal effect sterility)." [WB:cab, WB:cgc5599, WB:cgc7141, WB:WBPerson557]
|
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|
organism morphology variant
|
"Animals exhibit variations in the form, structure or composition of any part of their anatomy compared to control animals." [WB:cab, WB:WBPaper00004402, WB:WBPaper00004403, WB:WBPaper00004651, WB:WBPaper00005654, WB:WBPaper00006395]
|
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postembryonic development variant
|
"Any variation in the progression of an animal over time, from hatching to adulthood, compared to control." [WB:WBPerson2021]
|
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slow growth
|
"Any variation that causes a reduction in growth rate compared to control." [WB:cab, WB:WBPaper00004402, WB:WBPaper00004403, WB:WBPaper00004651, WB:WBPaper00004769, WB:WBPaper00005654, WB:WBPaper00006395, WB:WBPaper00024497, WB:WBPerson557]
|
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sterile progeny
|
"Any variation that compromises the reproductive ability of the progeny of an animal." [WB:WBPerson2021, WB:WBPerson557]
|
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|
Variant
|
"Animals exhibit variations compared to a given control." [WB:WBPerson557]
|
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