| JCEG ID |
JCEG203 |
| Name |
F30A10.4
WormBase
NCBI Gene
|
| Human Ortholog |
GGDB:GCNT4
OMIM:
OrthoList :
GCNT7
GCNT4
GCNT2
GCNT3
GCNT1
GCNT6
(Ensembl Compara)
GWAS Catalog
| STREAM | RAF | p-value | OR | BETA | CI | Study |
| DOWNSTREAM |
|
0.000004
|
0.0888
|
|
(unit increase)] |
23362303
|
|
Wu JH 2013-01-29 Circ Cardiovasc Genet
Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.
|
Option tblastn : Query Worm Protein, Subject GGDB mRNA, E-val < 0.00001
|
| Family Name |
b6GnT |
| Locus Tag |
F30A10.4
|
| RNAi phenotype |
|
phenotype
|
WT
|
|
Microscope observation (Image)
|
|
|
COPAS (Image)
|
Normal
|
|
hsp-4::GFP (Image)
|
|
|
| Sequence Features |
tm:soluble
dxd:NFD/
gg_motif:M1, M2, M4
|
| Sequence |
CDS
atgtacttgatgtacagcagcgtatcctcaaaagtcaaagctttttatac
atttattaatacggacgaatctctgaagaagtttcaggagccaaaatggt
caattcgaatatttatttttatagctcttttaatttctttttcaatttta
ctaacagtttcctacaaatcaatgatgattccgaacaaatttatcgtgag
attatctggaaaagagcgcgctcctctgaagcatataacaagaagcatca
cgaaattcgcagattattattttacagaatctgaaagtcgatatttaaat
tgtgctagactaatcgacggagatgtggagtccattgacacatatgttaa
taatggaagaatgaagttagatgaagagaaattatttcaactttcaatgg
attgtgattcaattcaaaatcgtatttttcgagatatgcctccatttgaa
aaattgaaaagacctattgcatttgttcgaaatatctatggaatatatga
attacaagaggtttttctatccatttcatatcacccggataactatttct
gttatgcaatggattcaaaaagtagtgaaaaattgaagaaatctatgaga
ataatggctgattgctttgaaaatgtgattgtgttggataaagaatatga
tatggatagagctggtcataaacaagatgctgcacattttgattgtttaa
aacaaattcttgatgaacattggagtcatgccattacattacagaacttc
gacttgataatcaaatctcctaaacaactatctgatctcagtgaaattct
aaattacaccagtatcatgggttttgactatggatttacaagtagatatc
gaacatttgaagattggactccagctggaatgaaacttttcaaaaatgaa
caaagtgtacctctggaaatactccacaaaaaactaaaaattcgaaaaag
tttaaacgaagtaatcctttcgaaggtatttgtcaagtctttatttgata
aagtgaatctgcaaaatgtaatcaaaagatttgatgatagaacgcttttt
ggggttgacgaaatgatggttatgacactttttgaaaactatttgggatt
agatgggcaaatggaatctaattgtaccgtggcaaaggaagatatattaa
cacgtcaaactcattggcatcttgaacaatccgacggactatatcaagat
tgtaaatccaagtggttaaggcattcaatatgtgtaattggagtcgaatt
tctacaagaactttcaaaaagtccgatggttattgcaaacaaagtgaccg
ccaacttcgattttggaacgataatttgcgttcgtgaaatgataaaaacc
aataaaacaggaaataatccagattctcaatggctttcctactttccaca
gtttcgtgagatgttgttgaaagctaatggaacttattacaagaatagtt
ttcaatgttga
|
Protein
MYLMYSSVSSKVKAFYTFINTDESLKKFQEPKWSIRIFIFIALLISFSILLTVSYKSMMI
PNKFIVRLSGKERAPLKHITRSITKFADYYFTESESRYLNCARLIDGDVESIDTYVNNGR
MKLDEEKLFQLSMDCDSIQNRIFRDMPPFEKLKRPIAFVRNIYGIYELQEVFLSISYHPD
NYFCYAMDSKSSEKLKKSMRIMADCFENVIVLDKEYDMDRAGHKQDAAHFDCLKQILDEH
WSHAITLQNFDLIIKSPKQLSDLSEILNYTSIMGFDYGFTSRYRTFEDWTPAGMKLFKNE
QSVPLEILHKKLKIRKSLNEVILSKVFVKSLFDKVNLQNVIKRFDDRTLFGVDEMMVMTL
FENYLGLDGQMESNCTVAKEDILTRQTHWHLEQSDGLYQDCKSKWLRHSICVIGVEFLQE
LSKSPMVIANKVTANFDFGTIICVREMIKTNKTGNNPDSQWLSYFPQFREMLLKANGTYY
KNSFQC
|
| References |
|
| Functional Descriptions |
F30A10.4
none available
|
| Deletion Mutants |
|
| In Situ |
|
| Expression |
Expression
| db_name |
wbbt |
name |
def |
reliability |
expr_pattern |
paper |
WormAtlas |
| WB |
WBbt:0003679
|
neuron |
"Major cell type of nervous tissue, specialized for transmission of information in the form of patterns of impulses." [ISBN:0140512888] |
Enriched |
WBPaper00037950 : all-neurons_embryo_SelectivelyEnriched, all-neurons_embryo_enriched
|
WBPaper00037950
|
WormAtlas
|
| WB |
WBbt:0005784
|
germ line |
"cell line which early in development becomes differentiated from the remaining somatic cell line, and alone has the potential to undergo meiosis and form gametes." [ISBN:0140512888] |
Enriched |
WBPaper00044760 : germline_specific
|
WBPaper00044760
|
|
|
WBGene00009263
Phenotype
Homology_paralog
|
|
|
| Phenotype |
Definition |
RNAi / Allele |
|
embryonic lethal
|
"Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die." [WB:cab, WB:WBPaper00000179, WB:WBPaper00004403, WB:WBPaper00004540, WB:WBPaper00004651, WB:WBPaper00004769, WB:WBPaper00005654, WB:WBPaper00024497, WB:WBPaper00024925, WB:WBPaper00025054]
|
|
|
larval arrest
|
"The developmental program of the animals halts at any larval stage and thus fails to reach adulthood. In C.elegans, this occurs anytime during L1-L4 stage." [WB:WBPaper00002958, WB:WBPerson2021]
|
|
|
larval lethal
|
"The animal dies at any time between hatching and onset to adulthood." [GO:0002119, WB:WBPerson712]
|
|
|
maternal sterile
|
" Animals produce no or very few embryos as a result of experimental treatment. This is in contrast to sterility due to genetic perturbations (maternal effect sterility)." [WB:cab, WB:cgc5599, WB:cgc7141, WB:WBPerson557]
|
|
|
organism morphology variant
|
"Animals exhibit variations in the form, structure or composition of any part of their anatomy compared to control animals." [WB:cab, WB:WBPaper00004402, WB:WBPaper00004403, WB:WBPaper00004651, WB:WBPaper00005654, WB:WBPaper00006395]
|
|
|
postembryonic development variant
|
"Any variation in the progression of an animal over time, from hatching to adulthood, compared to control." [WB:WBPerson2021]
|
|
|
slow growth
|
"Any variation that causes a reduction in growth rate compared to control." [WB:cab, WB:WBPaper00004402, WB:WBPaper00004403, WB:WBPaper00004651, WB:WBPaper00004769, WB:WBPaper00005654, WB:WBPaper00006395, WB:WBPaper00024497, WB:WBPerson557]
|
|
|
sterile progeny
|
"Any variation that compromises the reproductive ability of the progeny of an animal." [WB:WBPerson2021, WB:WBPerson557]
|
|
|
Variant
|
"Animals exhibit variations compared to a given control." [WB:WBPerson557]
|
|
