JCEG ID |
JCEG201 |
Name |
R07B7.6
WormBase
NCBI Gene
|
Human Ortholog |
GGDB:GCNT3
OMIM:
OrthoList :
GCNT7
GCNT4
GCNT2
GCNT3
GCNT1
GCNT6
(Ensembl Compara)
Option tblastn : Query Worm Protein, Subject GGDB mRNA, E-val < 0.00001
|
Family Name |
b6GnT |
Locus Tag |
R07B7.6
|
RNAi phenotype |
phenotype
|
WT
|
Microscope observation (Image)
|
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COPAS (Image)
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Normal
|
hsp-4::GFP (Image)
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|
|
Sequence Features |
kr:Detected
tm:Detected
dxd:NHD/
gg_motif:M1, M2, M4
|
Sequence |
CDS
atgtcagccacaagatacaagagattaactgacattgatctagatgcgga tattaataccattcctgaatctcgttctattcaatcaacattaattggtt ttattctgttgtttggattcgtagcatgtatgatatttctcacaagtgtt caagctcatccggcaagagtatcactacaagataatggaaaaaacagtcc aattctaagaactcggtctcaagaaaaaccgagaaagaggaatattacca aatggatggacaattattttacggccgatgaaagtcaatttctaaattgc tcagaaatgataaaaaacaacaaagacgtaattgagctgtatgtgaataa tggacgaatgaaacttgacaacgaacgattatttgaattaccaatggatt gtccttcaataaaaaatcgaatatatggagacatgccatcatttcgacct ctcaaacgacccatcgcttttgtacgaactatttataagatttacgaact tcaagaggctttactatctatatcataccatccagacaatgtcttctgtt ttgtaatggattcaaagagtactgatcgattaaaagaatctgttagaata atgagtagttgttttacaaacgttgtagtacttggaaaagagtatagttt gaacagtggaggtcatgggcaagatccagcacattttgattgtctcaaaa ctatattagacagaaaatgggatcatgctattattcttcagaatttcgac ttgataatcaaaacgccttatcaactatcagatattagtgaatccctcaa ttacacaagtatcatgggttttgatcatggattctcctacagatacaata caaaagcaaagtggactccggctgggatgaagctttttaaaattgaaact ggagtgccaaatgaaattcttaatagaaacctaattgttcggaaaagctt aaacgaagtcattgtctcaaaagtctttgtgaaatcaatgttcgaaaaat tgaatatggatataatcatcaaactatttgatgataacgattactatgga gttgacgagatgcttgttcaaacactttatgaaaactatcttggtttgga aggacaaatggaatcaaattgtactagaaatcacaatgatattctgacaa gaatgacgcattgggattttagtggtcctaatggatttgacaaggaatgt cattcgaaatggaaacggcatggaatttgcattatgggtgttgaatacat gaatgaactaattaaaagtcaacaagtcatagcaaacaaagttatggcaa ctttcgatttcggaactattgcttgcatgcgtgagatgataaaaagaaat actgcaggggaaacgccaaatacccaatggttaacttcttttccgcagtt tcgagaaatgcaacaaaaggcaaacgggacatacgacaggaataagtttg attgttaa
atggacaattattttacggccgatgaaagtcaatttctaaattgctcaga aatgataaaaaacaacaaagacgtaattgagctgtatgtgaataatggac gaatgaaacttgacaacgaacgattatttgaattaccaatggattgtcct tcaataaaaaatcgaatatatggagacatgccatcatttcgacctctcaa acgacccatcgcttttgtacgaactatttataagatttacgaacttcaag aggctttactatctatatcataccatccagacaatgtcttctgttttgta atggattcaaagagtactgatcgattaaaagaatctgttagaataatgag tagttgttttacaaacgttgtagtacttggaaaagagtatagtttgaaca gtggaggtcatgggcaagatccagcacattttgattgtctcaaaactata ttagacagaaaatgggatcatgctattattcttcagaatttcgacttgat aatcaaaacgccttatcaactatcagatattagtgaatccctcaattaca caagtatcatgggttttgatcatggattctcctacagatacaatacaaaa gcaaagtggactccggctgggatgaagctttttaaaattgaaactggagt gccaaatgaaattcttaatagaaacctaattgttcggaaaagcttaaacg aagtcattgtctcaaaagtctttgtgaaatcaatgttcgaaaaattgaat atggatataatcatcaaactatttgatgataacgattactatggagttga cgagatgcttgttcaaacactttatgaaaactatcttggtttggaaggac aaatggaatcaaattgtactagaaatcacaatgatattctgacaagaatg acgcattgggattttagtggtcctaatggatttgacaaggaatgtcattc gaaatggaaacggcatggaatttgcattatgggtgttgaatacatgaatg aactaattaaaagtcaacaagtcatagcaaacaaagttatggcaactttc gatttcggaactattgcttgcatgcgtgagatgataaaaagaaatactgc aggggaaacgccaaatacccaatggttaacttcttttccgcagtttcgag aaatgcaacaaaaggcaaacgggacatacgacaggaataagtttgattgt taa
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Protein
MSATRYKRLTDIDLDADINTIPESRSIQSTLIGFILLFGFVACMIFLTSVQAHPARVSLQ DNGKNSPILRTRSQEKPRKRNITKWMDNYFTADESQFLNCSEMIKNNKDVIELYVNNGRM KLDNERLFELPMDCPSIKNRIYGDMPSFRPLKRPIAFVRTIYKIYELQEALLSISYHPDN VFCFVMDSKSTDRLKESVRIMSSCFTNVVVLGKEYSLNSGGHGQDPAHFDCLKTILDRKW DHAIILQNFDLIIKTPYQLSDISESLNYTSIMGFDHGFSYRYNTKAKWTPAGMKLFKIET GVPNEILNRNLIVRKSLNEVIVSKVFVKSMFEKLNMDIIIKLFDDNDYYGVDEMLVQTLY ENYLGLEGQMESNCTRNHNDILTRMTHWDFSGPNGFDKECHSKWKRHGICIMGVEYMNEL IKSQQVIANKVMATFDFGTIACMREMIKRNTAGETPNTQWLTSFPQFREMQQKANGTYDR NKFDC
MDNYFTADESQFLNCSEMIKNNKDVIELYVNNGRMKLDNERLFELPMDCPSIKNRIYGDM PSFRPLKRPIAFVRTIYKIYELQEALLSISYHPDNVFCFVMDSKSTDRLKESVRIMSSCF TNVVVLGKEYSLNSGGHGQDPAHFDCLKTILDRKWDHAIILQNFDLIIKTPYQLSDISES LNYTSIMGFDHGFSYRYNTKAKWTPAGMKLFKIETGVPNEILNRNLIVRKSLNEVIVSKV FVKSMFEKLNMDIIIKLFDDNDYYGVDEMLVQTLYENYLGLEGQMESNCTRNHNDILTRM THWDFSGPNGFDKECHSKWKRHGICIMGVEYMNELIKSQQVIANKVMATFDFGTIACMRE MIKRNTAGETPNTQWLTSFPQFREMQQKANGTYDRNKFDC
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References |
|
Functional Descriptions |
R07B7.6
none available
|
Deletion Mutants |
|
In Situ |
|
Expression |
Expression
db_name |
wbbt |
name |
def |
reliability |
expr_pattern |
paper |
WormAtlas |
WB |
WBbt:0005772
|
intestine |
"A chain of very large cuboidal cells forming a wide central lumen in which food arrives from the posterior pharynx, is digested, and from which waste products proceed to the rectum. Intestinal rings form in groups of two and four cells surrounding the common lumen; thus the epithelium is only one cell deep at any point, with neighboring cells firmly secured to their neighbors by apical adherens junctions. These cells have very large nuclei and many large vacuoles, yolk granules, and other inclusions; the latter increase in number and electron density as the animal ages." [WBPaper:00038216] |
Enriched |
WBPaper00026980 : intestine_enriched
|
WBPaper00026980
|
WormAtlas
|
WB |
WBbt:0005772
|
intestine |
"A chain of very large cuboidal cells forming a wide central lumen in which food arrives from the posterior pharynx, is digested, and from which waste products proceed to the rectum. Intestinal rings form in groups of two and four cells surrounding the common lumen; thus the epithelium is only one cell deep at any point, with neighboring cells firmly secured to their neighbors by apical adherens junctions. These cells have very large nuclei and many large vacuoles, yolk granules, and other inclusions; the latter increase in number and electron density as the animal ages." [WBPaper:00038216] |
Enriched |
WBPaper00037950 : intestine_larva_SelectivelyEnriched, intestine_larva_enriched
|
WBPaper00037950
|
WormAtlas
|
WB |
WBbt:0006828
|
FLP |
"Neuron class of two neurons, which have ciliated endings situated immediately dorsal to the lateral inner labial sensilla in the head but have no associated sheath or socket cells; they have flattened processes in this region of the cilium." [WB:Paper00000938] |
Enriched |
WBPaper00040420 : FLP_enriched
|
WBPaper00040420
|
|
|
WBGene00011090
Phenotype
Homology_paralog
|
|
Phenotype |
Definition |
RNAi / Allele |
embryonic lethal
|
"Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die." [WB:cab, WB:WBPaper00000179, WB:WBPaper00004403, WB:WBPaper00004540, WB:WBPaper00004651, WB:WBPaper00004769, WB:WBPaper00005654, WB:WBPaper00024497, WB:WBPaper00024925, WB:WBPaper00025054]
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larval arrest
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"The developmental program of the animals halts at any larval stage and thus fails to reach adulthood. In C.elegans, this occurs anytime during L1-L4 stage." [WB:WBPaper00002958, WB:WBPerson2021]
|
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larval lethal
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"The animal dies at any time between hatching and onset to adulthood." [GO:0002119, WB:WBPerson712]
|
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maternal sterile
|
" Animals produce no or very few embryos as a result of experimental treatment. This is in contrast to sterility due to genetic perturbations (maternal effect sterility)." [WB:cab, WB:cgc5599, WB:cgc7141, WB:WBPerson557]
|
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organism morphology variant
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"Animals exhibit variations in the form, structure or composition of any part of their anatomy compared to control animals." [WB:cab, WB:WBPaper00004402, WB:WBPaper00004403, WB:WBPaper00004651, WB:WBPaper00005654, WB:WBPaper00006395]
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postembryonic development variant
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"Any variation in the progression of an animal over time, from hatching to adulthood, compared to control." [WB:WBPerson2021]
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slow growth
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"Any variation that causes a reduction in growth rate compared to control." [WB:cab, WB:WBPaper00004402, WB:WBPaper00004403, WB:WBPaper00004651, WB:WBPaper00004769, WB:WBPaper00005654, WB:WBPaper00006395, WB:WBPaper00024497, WB:WBPerson557]
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sterile progeny
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"Any variation that compromises the reproductive ability of the progeny of an animal." [WB:WBPerson2021, WB:WBPerson557]
|
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Variant
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"Animals exhibit variations compared to a given control." [WB:WBPerson557]
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