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JCEG ID JCEG193
Name gly-18      WormBase    NCBI Gene
Human Ortholog

GGDB:GCNT3 

OMIM:

OrthoList :   GCNT7   GCNT4   GCNT2   GCNT3   GCNT1   GCNT6  (Ensembl Compara)

GGDB Score E-val
GCNT3 123 7e-30
GCNT2 122 1e-29
GCNT1 115 1e-27
GCNT2 112 1e-26
GCNT2 108 2e-25
GCNT4 104 3e-24
Option tblastn : Query Worm Protein, Subject GGDB mRNA, E-val < 0.00001
Family Name b6GnT
Locus Tag F22D6.11
RNAi phenotype
phenotype WT
Microscope observation (Image)
COPAS (Image)

Normal

hsp-4::GFP (Image)
Sequence Features kr:Detected
tm:soluble
dxd:GVD/DEG
gg_motif:M1, M2, M3, M4, M5
Sequence CDS
Protein
References

Warren CE, Krizus A, Dennis JW Glycobiology (2001) 11 (11) :979-88 [PMID : 11744632] Complementary expression patterns of six nonessential Caenorhabditis elegans core 2/I N-acetylglucosaminyltransferase homologues.

Berninsone PM WormBook (2006) :1-22 [PMID : 18050430] Carbohydrates and glycosylation.

Shaye DD, Greenwald I PLoS ONE (2011) 6 (5) :e20085 [PMID : 21647448] OrthoList: a compendium of C. elegans genes with human orthologs.

WormBase (WS254)

Functional Descriptions gly-18

GLY-18 is similar to 2/I N-acetylglucosaminyltransferase.
Deletion Mutants qa704
In Situ
Expression Expression
db_name wbbt name def reliability expr_pattern paper WormAtlas
WB WBbt:0003675

muscle cell "contractile cell that makes up muscle tissue." [WB:rynl] Enriched WBPaper00031003 : 0hr_muscle_enriched, total_muscle_enriched
WBPaper00031003 WormAtlas
WB WBbt:0003955

ALA "Neuron class of one neuron, sends processes laterally and along dorsal cord." [ISBN:0-87969-307-X] Certain WB:Expr1786 WBPaper00005030 WormAtlas
WB WBbt:0004506

gon_herm_dtc_P "Posterior distal tip cell, inhibit meiosis in neighbouring germ cells, lead gonad during morphogenesis, herm gonad" [ISBN:0-87969-307-X] Certain WB:Expr1786 WBPaper00005030
WB WBbt:0004520

gon_herm_dtc_A "Anterior distal tip cell, inhibit meiosis in neighbouring germ cells, lead gonad during morphogenesis, herm gonad" [ISBN:0-87969-307-X] Certain WB:Expr1786 WBPaper00005030
WB WBbt:0004783

GLRR "Set of six cells that form a thin cylindrical sheet between pharynx and ring neuropile; no chemical synapses, but gap junctions with muscle arms and RME motor neurons" [ISBN:0-87969-307-X] Certain WB:Expr1786 WBPaper00005030 WormAtlas
WB WBbt:0004784

GLRL "Set of six cells that form a thin cylindrical sheet between pharynx and ring neuropile; no chemical synapses, but gap junctions with muscle arms and RME motor neurons" [ISBN:0-87969-307-X] Certain WB:Expr1786 WBPaper00005030 WormAtlas
WB WBbt:0004849

vm1 "Vulval muscle 1" [ISBN:0-87969-307-X] Certain WB:Expr1786 WBPaper00005030
WB WBbt:0004850

vm1 "Vulval muscle 1" [ISBN:0-87969-307-X] Certain WB:Expr1786 WBPaper00005030 WormAtlas
WB WBbt:0004853

vm1 "Vulval muscle 1" [ISBN:0-87969-307-X] Certain WB:Expr1786 WBPaper00005030
WB WBbt:0004854

vm1 "Vulval muscle 1" [ISBN:0-87969-307-X] Certain WB:Expr1786 WBPaper00005030
WB WBbt:0005750

socket cell "An interfacial epithelial cell which forms a distal cap on a sheath cell to bind the sheath of a sensillum to the neighboring hypodermis, via adherens junctions. There is often a narrow opening through the socket from the exterior into the sheath channel, allowing ciliated dendrites to be exposed to the external environment. The socket cell functions similarly to a glial cell." [WBPaper:00038216] Partial WB:Expr1786 WBPaper00005030 WormAtlas
WB WBbt:0005751

coelomocyte "A free-floating spherical cell lying in the pseudocoelomic cavity of larvae and adult C. elegans which can endocytose many compounds, possibly for immune surveillance. There are six coelomocytes in adult hermaphrodites, and they display prominent cytoplasmic inclusions and vacuoles." [WBPaper:00038216] Certain WB:Expr1786 WBPaper00005030 WormAtlas
WB WBbt:0005751

coelomocyte "A free-floating spherical cell lying in the pseudocoelomic cavity of larvae and adult C. elegans which can endocytose many compounds, possibly for immune surveillance. There are six coelomocytes in adult hermaphrodites, and they display prominent cytoplasmic inclusions and vacuoles." [WBPaper:00038216] Enriched WBPaper00037950 : coelomocytes_embryo_SelectivelyEnriched, coelomocytes_embryo_enriched
WBPaper00037950 WormAtlas
WB WBbt:0005753

seam cell "a group of hypodermal cells that lie along the apical midline of the hypodermis, at the extreme left and right sides between nose and tail" [WB:rynl, WBPaper:00038216] Certain WB:Expr1786 WBPaper00005030 WormAtlas
WB WBbt:0005772

intestine "A chain of very large cuboidal cells forming a wide central lumen in which food arrives from the posterior pharynx, is digested, and from which waste products proceed to the rectum. Intestinal rings form in groups of two and four cells surrounding the common lumen; thus the epithelium is only one cell deep at any point, with neighboring cells firmly secured to their neighbors by apical adherens junctions. These cells have very large nuclei and many large vacuoles, yolk granules, and other inclusions; the latter increase in number and electron density as the animal ages." [WBPaper:00038216] Enriched WBPaper00040985 : AIN-2_L4_intestine
WBPaper00040985 WormAtlas
WB WBbt:0005784

germ line "cell line which early in development becomes differentiated from the remaining somatic cell line, and alone has the potential to undergo meiosis and form gametes." [ISBN:0140512888] Enriched WBPaper00044760 : germline_specific
WBPaper00044760
WB WBbt:0005796

intestinal muscle "intestinal muscle cell, attach to intestine and body wall anterior to anus" [WB:Paper00000653] Certain WB:Expr1786 WBPaper00005030 WormAtlas
WB WBbt:0005798

anal sphincter muscle "a saddle-shaped muscle cell that encircles the intestinal-rectal valve" [WB:rynl, WBPaper:00038216] Certain WB:Expr1786 WBPaper00005030 WormAtlas
WB WBbt:0005813

body wall musculature "Longitudinal bands of muscle cells surrounding animal body, with one band running in each quadrant of the body, regulated contraction and relaxation of these muscles cause locomotion." [ISBN:0-87969-433-5] Partial WB:Expr1786 WBPaper00005030 WormAtlas

WBGene00001643
Phenotype
Homology_paralog

Observed Observed and NOT Observed
Phenotype Definition RNAi / Allele


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