| JCEG ID |
JCEG181 |
| Name |
T15D6.5
WormBase
NCBI Gene
|
| Human Ortholog |
GGDB:B3GNT3
OMIM:
603095
604066
605863
615313
615315
615357
OrthoList :
B3GALT1
B3GALT2
B3GALT4
B3GALNT1
B3GALT5
(Ensembl Compara)
GWAS Catalog
| STREAM | RAF | p-value | OR | BETA | CI | Study |
| DOWNSTREAM |
0.26 |
0.0000000000001
(CA19-9)
|
|
0.072
(U/ml decrease)
|
[0.029-0.115] |
23300138
|
|
He M 2013-01-07 Gut
A genome wide association study of genetic loci that influence tumour biomarkers cancer antigen 19-9, carcinoembryonic antigen and α fetoprotein and their associations with cancer risk.
|
Option tblastn : Query Worm Protein, Subject GGDB mRNA, E-val < 0.00001
|
| Family Name |
b3GalT1/b3GnT orthologs |
| Locus Tag |
T15D6.5
|
| RNAi phenotype |
|
phenotype
|
WT
|
|
Microscope observation (Image)
|
|
|
COPAS (Image)
|
Normal
|
|
hsp-4::GFP (Image)
|
|
|
| Sequence Features |
gg_motif:M2,M3,M4,M6
tm:Detected
dxd:Detected
kr:Detected
|
| Sequence |
CDS
atggatatcacggttcttgatgtggttcccaagtgcaaaaagatggtaat
ctattgcattcaggaacgttctgcttttggaaaaatgcttgaaacgtttc
gttttcattctactatgataagaaattgcacaaaacgcctaactctaaag
gcgacaattattgttgttgtactgttttattgggttttgctccaaaatca
agaagccccaatttctgagttactcgaggaacgctgcgatcgaagtggat
ggaattatagcacaactgccggcagaacacgggattttggttcaaggttc
cgtgtctcatttgcggatattcaaaaatctcaaagatggctgcaccttcc
aaaaattaaaaatccaacgtggaatcgtgatattttaatgatagttgcca
gtaggccaggaagtgtttcacggaggaaagttctgaggaagacttggatg
aacaaggcgaatagtaaaataatacggaatggaaggatgcaagtattgtt
tttagttgggatggtagctggagatcgtgatctgatgaaagccgtgaaga
aggaagcagaatcatttggtgacattattgtgatgaacttagaagatact
tacgataacttgccgttcaaggtgctatccctacttctttatggaacaaa
taaggcgtccgatttcaaaattattggaaaaatcgacgatgacgtcattt
tcttcccggaccgtcttaccccactgttggacgaaaacgtgattgattcc
agcagctatagcatctacgggtacttgtcacaagatgatgagcttgtcgt
tcgaaacgaaactaaaccatggtatgtacctgaaactgcatataactgca
cgaaatatccggtgtacgctttgggaccattttatttgatcactaacaag
gcagctaatcttatcgtggaaaattccagatttcaaaatttcatgacagt
tgaagacgctcttatcgctggaattattgccgagggtcttggaattcagc
ggcacagtcttccaatggtgttcagatacagatttgataacactgacgga
aagaaaattctctcgtggcatatgtccaaaaggagtgacagacaattttt
ggatttttatcagcaaagtttagcactgtatcaactggaacaggaatctt
aa
|
Protein
MDITVLDVVPKCKKMVIYCIQERSAFGKMLETFRFHSTMIRNCTKRLTLKATIIVVVLFY
WVLLQNQEAPISELLEERCDRSGWNYSTTAGRTRDFGSRFRVSFADIQKSQRWLHLPKIK
NPTWNRDILMIVASRPGSVSRRKVLRKTWMNKANSKIIRNGRMQVLFLVGMVAGDRDLMK
AVKKEAESFGDIIVMNLEDTYDNLPFKVLSLLLYGTNKASDFKIIGKIDDDVIFFPDRLT
PLLDENVIDSSSYSIYGYLSQDDELVVRNETKPWYVPETAYNCTKYPVYALGPFYLITNK
AANLIVENSRFQNFMTVEDALIAGIIAEGLGIQRHSLPMVFRYRFDNTDGKKILSWHMSK
RSDRQFLDFYQQSLALYQLEQES
|
| References |
|
| Functional Descriptions |
T15D6.5
none available
|
| Deletion Mutants |
|
| In Situ |
|
| Expression |
Expression
|
WBGene00011780
Phenotype
Homology_paralog
|
|
|
| Phenotype |
Definition |
RNAi / Allele |
|
embryonic lethal
|
"Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die." [WB:cab, WB:WBPaper00000179, WB:WBPaper00004403, WB:WBPaper00004540, WB:WBPaper00004651, WB:WBPaper00004769, WB:WBPaper00005654, WB:WBPaper00024497, WB:WBPaper00024925, WB:WBPaper00025054]
|
|
|
larval arrest
|
"The developmental program of the animals halts at any larval stage and thus fails to reach adulthood. In C.elegans, this occurs anytime during L1-L4 stage." [WB:WBPaper00002958, WB:WBPerson2021]
|
|
|
larval lethal
|
"The animal dies at any time between hatching and onset to adulthood." [GO:0002119, WB:WBPerson712]
|
|
|
maternal sterile
|
" Animals produce no or very few embryos as a result of experimental treatment. This is in contrast to sterility due to genetic perturbations (maternal effect sterility)." [WB:cab, WB:cgc5599, WB:cgc7141, WB:WBPerson557]
|
|
|
organism morphology variant
|
"Animals exhibit variations in the form, structure or composition of any part of their anatomy compared to control animals." [WB:cab, WB:WBPaper00004402, WB:WBPaper00004403, WB:WBPaper00004651, WB:WBPaper00005654, WB:WBPaper00006395]
|
|
|
postembryonic development variant
|
"Any variation in the progression of an animal over time, from hatching to adulthood, compared to control." [WB:WBPerson2021]
|
|
|
slow growth
|
"Any variation that causes a reduction in growth rate compared to control." [WB:cab, WB:WBPaper00004402, WB:WBPaper00004403, WB:WBPaper00004651, WB:WBPaper00004769, WB:WBPaper00005654, WB:WBPaper00006395, WB:WBPaper00024497, WB:WBPerson557]
|
|
|
sterile progeny
|
"Any variation that compromises the reproductive ability of the progeny of an animal." [WB:WBPerson2021, WB:WBPerson557]
|
|
|
Variant
|
"Animals exhibit variations compared to a given control." [WB:WBPerson557]
|
|