JCEG ID |
JCEG062 |
Name |
T19B10.8
WormBase
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Human Ortholog |
GGDB:PGAP1
OMIM:
611655
OrthoList :
PGAP1
(Ensembl Compara)
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Family Name |
GPI-anchor synthesis |
Locus Tag |
T19B10.8
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RNAi phenotype |
phenotype
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Microscope observation (Image)
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COPAS (Image)
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hsp-4::GFP (Image)
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Sequence Features |
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Sequence |
CDS
ATGGCCACGGGTAAAGCGGAGATCCGCAGGCAGCGGGAGAACTGTGTGATCTTCGCAGGC ATCACGTATGGCATCATCTTCACTCTAGTGGCAGTAGTTCTAGGATTTGGTGTGTATCTT CACACTCTTGTTCATCAGGAAAATTCGTGCTCAATGACTTATATGTACAGAAAGTTGGAA TTCTTGGAAATTCCGTTGTTAACCCCTCAATCGGACAAGTACAGCTTCTCTGTGTACAAT GAAGGGCATCGTTGGTGGAATCGAAGTACAATCGAAGCAGGACAAATTCCAGTTCTTTTC ATTCCCGGAAGTCAGGGTTCGGGAAAACAGATTCGATCACTTGCATCGGTTATGCAGAAT AAAACAGAAATGCGCTATGCTCCATTTTCATTTCGATTTTTCGCCGTAGATTTCGATGAA GAGATGACGTTCATGAATGGACATATTGTGAAACGGCAAATTGAATATGTGATGAAAGCT ATTCGAAAGATTCAATCCATGATGCGAGGGAATAGGAAAATAGTTCTTGTCGGTCACTCT TACGGAGGAATGATTGCTCTTTTAACTACTATTTATCCGGAATACCAAAAAGATGTCGAA CTGATTATTGTGAAAGGAGCTCCACTTAACAAGCAACCATTAGTGAACGATTGGTTTTCA CTGCGTTTTAATTTGTTGTTGGTAAACCAATGGAACGCATTGCAAAATAATAACCTATCA CATGTCGGAGTTGTAGCATATTCTGGTGGAATTCGAGACTATATGATTCCAGATGAATGG TCTATTTTGCGAAATGTTACAAATCGACCTCTCTGGGCCATCGACGGAGTTTCGGACCTC GGCGCTGATCATCTCGCAATTCTTTGGTGCAACGAGTTTGTTCGTCATGTTTCACGCGTT CTCTGGTCGTATGCAGAAAATCTCGACACGTTGACCGGACGTCAAGTTGTTCAAAAATTC TATAAGGAAGACGTCGATCGAAATATAAAACGTGCCAAACTAGTCCGACATGTTAATGAT GTGCCATCGAAGGAAATTAAAATCGGGGAAAAATACAGAGGATTCAGAGTTAACGAAACC CAATTTGCACTTCTAATCAAACCAAAGCGCTTCGAAGTTTTGTCGGTGAGAGTAAATGCG TCGTGTGTGAACTCTATGACCACAGTTCGTTATGATGAATCTATGATGTATTTCAAAAAC TCGTCGGATGGTGCAGTGGAAACGTGGATTTATCGAGCATTGGAAAAAGAAGAAGTTCGT TTAGTTCTCGATGTGACAGCTCCCTGTAGTATTGATATTCAAATGAGCCCTCCAATGACA GTGCAGTTATGGCGTTTTTATGAGATCGTGTTCTCTCATTTACATGAAGTAGGCGGAACC ATGATTGTGATTAGCGTATTCTTCGCTATTTTGGTTCGTGAGACACTGTTCTACAGTACG ACGGCTGTTTTGTTGACCAACCTTGTTGCCTTATTTTTTGTGATTCACGGAAGTACAGAC TACACGGACACCACTACACTCCCCATGGCTTTGGGATATTTCATGGCACTGGGTTGGAGA GCGATATGCTTTGTCGTTGACTGGCTTATTGTGTCAAGAATTGGATTTGTCAAAACAGGA CATTTGGCGCTCCGCGATGACAAGTTAATGAATGGCCTGTACCTGGTTGGATCAGCAATC ACAATCATGGCAAGAAATGAGGGATCAATTGTTTTGATTATTCTCCTCGCATATCGTCAT CATCCACGGGCAGTTCTTCTGATTCTCCCGACATTGATCCCATATATTCTCAAACTGGTC GGCTTCCCGTGGTTCTCGACGGATTCTCTTATCGTGTACCAACTGCAATATCAACCTGCA TTTTACGCCGGCGGACTCTATCTCTTCGGTCTTGTTTCAAATCTCGGAAATCGACAGATT ACTTTGCGATTACTCGTTTACGGACTTGTGCCAGCATTCCTCTATTTAATCACATCGCCT CTCGAACTATTTTCCGGATTCACCCTCATCATATTCAGCACAGCTCGCTTCGTTACATTC CCATCACGTAAATCTGTCACTCCTCCTGTTCCCGAGCAAGAAAGAGTTCAAGTGGAACAA CCACGTCCAATTCAAAACAACAGACAACGCTATAACCTACGAAATAGGAGAAGATAA
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Protein
MATGKAEIRRQRENCVIFAGITYGIIFTLVAVVLGFGVYLHTLVHQENSCSMTYMYRKLE FLEIPLLTPQSDKYSFSVYNEGHRWWNRSTIEAGQIPVLFIPGSQGSGKQIRSLASVMQN KTEMRYAPFSFRFFAVDFDEEMTFMNGHIVKRQIEYVMKAIRKIQSMMRGNRKIVLVGHS YGGMIALLTTIYPEYQKDVELIIVKGAPLNKQPLVNDWFSLRFNLLLVNQWNALQNNNLS HVGVVAYSGGIRDYMIPDEWSILRNVTNRPLWAIDGVSDLGADHLAILWCNEFVRHVSRV LWSYAENLDTLTGRQVVQKFYKEDVDRNIKRAKLVRHVNDVPSKEIKIGEKYRGFRVNET QFALLIKPKRFEVLSVRVNASCVNSMTTVRYDESMMYFKNSSDGAVETWIYRALEKEEVR LVLDVTAPCSIDIQMSPPMTVQLWRFYEIVFSHLHEVGGTMIVISVFFAILVRETLFYST TAVLLTNLVALFFVIHGSTDYTDTTTLPMALGYFMALGWRAICFVVDWLIVSRIGFVKTG HLALRDDKLMNGLYLVGSAITIMARNEGSIVLIILLAYRHHPRAVLLILPTLIPYILKLV GFPWFSTDSLIVYQLQYQPAFYAGGLYLFGLVSNLGNRQITLRLLVYGLVPAFLYLITSP LELFSGFTLIIFSTARFVTFPSRKSVTPPVPEQERVQVEQPRPIQNNRQRYNLRNRRR
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References |
Piano F, Schetter AJ, Morton DG, Gunsalus KC, Reinke V, Kim SK, Kemphues KJ
Curr. Biol.
(2002)
12
(22)
:1959-64
[PMID : 12445391]
Gene clustering based on RNAi phenotypes of ovary-enriched genes in C. elegans.
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Functional Descriptions |
T19B10.8
none available
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Deletion Mutants |
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In Situ |
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Expression |
Expression
db_name |
wbbt |
name |
def |
reliability |
expr_pattern |
paper |
WormAtlas |
WB |
WBbt:0005772
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intestine |
"A chain of very large cuboidal cells forming a wide central lumen in which food arrives from the posterior pharynx, is digested, and from which waste products proceed to the rectum. Intestinal rings form in groups of two and four cells surrounding the common lumen; thus the epithelium is only one cell deep at any point, with neighboring cells firmly secured to their neighbors by apical adherens junctions. These cells have very large nuclei and many large vacuoles, yolk granules, and other inclusions; the latter increase in number and electron density as the animal ages." [WBPaper:00038216] |
Enriched |
WBPaper00026980 : intestine_enriched
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WBPaper00026980
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WormAtlas
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WBGene00011835
Phenotype
Homology_paralog
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Phenotype |
Definition |
RNAi / Allele |
embryonic lethal
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"Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die." [WB:cab, WB:WBPaper00000179, WB:WBPaper00004403, WB:WBPaper00004540, WB:WBPaper00004651, WB:WBPaper00004769, WB:WBPaper00005654, WB:WBPaper00024497, WB:WBPaper00024925, WB:WBPaper00025054]
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larval arrest
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"The developmental program of the animals halts at any larval stage and thus fails to reach adulthood. In C.elegans, this occurs anytime during L1-L4 stage." [WB:WBPaper00002958, WB:WBPerson2021]
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larval lethal
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"The animal dies at any time between hatching and onset to adulthood." [GO:0002119, WB:WBPerson712]
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lethal
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"Animals die prematurely at any stage of the life cycle." [WB:WBPaper00001109, WB:WBPerson2021]
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maternal sterile
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" Animals produce no or very few embryos as a result of experimental treatment. This is in contrast to sterility due to genetic perturbations (maternal effect sterility)." [WB:cab, WB:cgc5599, WB:cgc7141, WB:WBPerson557]
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organism morphology variant
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"Animals exhibit variations in the form, structure or composition of any part of their anatomy compared to control animals." [WB:cab, WB:WBPaper00004402, WB:WBPaper00004403, WB:WBPaper00004651, WB:WBPaper00005654, WB:WBPaper00006395]
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postembryonic development variant
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"Any variation in the progression of an animal over time, from hatching to adulthood, compared to control." [WB:WBPerson2021]
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slow growth
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"Any variation that causes a reduction in growth rate compared to control." [WB:cab, WB:WBPaper00004402, WB:WBPaper00004403, WB:WBPaper00004651, WB:WBPaper00004769, WB:WBPaper00005654, WB:WBPaper00006395, WB:WBPaper00024497, WB:WBPerson557]
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sterile progeny
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"Any variation that compromises the reproductive ability of the progeny of an animal." [WB:WBPerson2021, WB:WBPerson557]
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Variant
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"Animals exhibit variations compared to a given control." [WB:WBPerson557]
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