JCEG ID |
JCEG005 |
Name |
H43I07.3
WormBase
NCBI Gene
|
Human Ortholog |
GGDB:ALG5
OMIM:
604565
OrthoList :
ALG5
(Ensembl Compara)
GGDB |
Score |
E-val |
ALG5
|
276 |
4e-76 |
DPM1
|
58 |
3e-10 |
Option tblastn : Query Worm Protein, Subject GGDB mRNA, E-val < 0.00001
|
Family Name |
Asparagine-linked glycosylation (ALG) genes |
Locus Tag |
H43I07.3
|
RNAi phenotype |
phenotype
|
hsp-4::GFP increase
|
Microscope observation (Image)
|
|
COPAS (Image)
|
Increase
|
hsp-4::GFP (Image)
|
Increase
|
|
Sequence Features |
kr:N.D.
tm:Detected
|
Sequence |
CDS
atgtgggatttaatttcgccggaaattttctcaatacaaaatctttgcct gctgggatttctcgtcgcctcaatcgccgtgagcagcctcttcacacttt cctacgcaacaccatgggtccgccgacgtcgtgccgagtacctagaaccg gaaatcgtctacagaagctcgccggagcaaaaattcccggttttgttgca agaagatcgggatgctccgaaaagatatacgccgtcgagctgctatcttt ctgtgattattccggctatgaatgaagttgaaagaatcgaaattatgctc gatgattgttgtgactacttggaagctcgtgctgagaaggataaagattt cacctacgaaattatcgttgttgatgatggatccaccgacgaaacggctg atatagtcgttcaaatcggcgctaggcgtcagaatttacgagttttgaaa atgaaagctaatcggggaaaaggtggcgctgtaaaaatgggagtcctcca ctcatcaggaaaactaattctcttcgcagatgccgatggagctacaaaat tcgccgattttgaaaatctcgagaaagaaatgctccgaactgccggcgga gagccacttgatgaatcatttccagcagttattgttgcttctagagcgca tttggaagccgaatctatggctgttagatcagttccacgcacaattttaa tgctcggttttcacttactcgtctatacttttgctgcaagaacaattaaa gatacacagtgtggattcaaactttttactagatcgattgctgcgaggat tttcccagtacttcacattgagcgctgggcttttgacgttgagctcatct tcctttgcgaaagatggacggtccctgtgaaagaagtttcagttcgatgg actgaaatcgaagggtctaagattactccaatttggtcttggcttcaaat gggccgagatcttgtgctcatttggttcagatatacgatcggaatttgga cggatgaccagcctcgctaa
|
Protein
MWDLISPEIFSIQNLCLLGFLVASIAVSSLFTLSYATPWVRRRRAEYLEPEIVYRSSPEQ KFPVLLQEDRDAPKRYTPSSCYLSVIIPAMNEVERIEIMLDDCCDYLEARAEKDKDFTYE IIVVDDGSTDETADIVVQIGARRQNLRVLKMKANRGKGGAVKMGVLHSSGKLILFADADG ATKFADFENLEKEMLRTAGGEPLDESFPAVIVASRAHLEAESMAVRSVPRTILMLGFHLL VYTFAARTIKDTQCGFKLFTRSIAARIFPVLHIERWAFDVELIFLCERWTVPVKEVSVRW TEIEGSKITPIWSWLQMGRDLVLIWFRYTIGIWTDDQPR
|
References |
|
Functional Descriptions |
H43I07.3
none available
|
Deletion Mutants |
|
In Situ |
|
Expression |
Expression
db_name |
wbbt |
name |
def |
reliability |
expr_pattern |
paper |
WormAtlas |
WB |
WBbt:0003681
|
pharynx |
"the feeding organ, a neuro-muscular pump in the head of the animal, used to ingest food, bacteria suspended in liquid, filter them out, grind them up and transport posteriorly into the instestine." [WB:rynl] |
|
WB:Expr6295
|
WBPaper00006525
|
WormAtlas
|
WB |
WBbt:0005735
|
nervous system |
"Complement of nervous tissue (neurones, nerves, receptors and support cells) serving to detect, relay and coordinate information about an animal's internal and external environments and to initiate and integrate its effector responses and activities." [ISBN:0-14-051288-8, WB:rynl] |
|
WB:Expr6295
|
WBPaper00006525
|
WormAtlas
|
WB |
WBbt:0005772
|
intestine |
"A chain of very large cuboidal cells forming a wide central lumen in which food arrives from the posterior pharynx, is digested, and from which waste products proceed to the rectum. Intestinal rings form in groups of two and four cells surrounding the common lumen; thus the epithelium is only one cell deep at any point, with neighboring cells firmly secured to their neighbors by apical adherens junctions. These cells have very large nuclei and many large vacuoles, yolk granules, and other inclusions; the latter increase in number and electron density as the animal ages." [WBPaper:00038216] |
Enriched |
WBPaper00037950 : intestine_embryo_enriched
|
WBPaper00037950
|
WormAtlas
|
WB |
WBbt:0005813
|
body wall musculature |
"Longitudinal bands of muscle cells surrounding animal body, with one band running in each quadrant of the body, regulated contraction and relaxation of these muscles cause locomotion." [ISBN:0-87969-433-5] |
|
WB:Expr6295
|
WBPaper00006525
|
WormAtlas
|
WB |
WBbt:0006749
|
nerve ring |
"the most extensive region of neuropil in the animal, consists of a large toroidal bundle of processes." [WB:Paper00000938] |
|
WB:Expr6295
|
WBPaper00006525
|
WormAtlas
|
WB |
WBbt:0006751
|
head neuron |
"neuron with its cell body situated in the head, excluding the pharynx." [WB:rynl] |
|
WB:Expr6295
|
WBPaper00006525
|
|
WB |
WBbt:0006759
|
tail neuron |
"neuron with its cell body situated in the tail, posterior to rectum." [WB:rynl] |
|
WB:Expr6295
|
WBPaper00006525
|
|
|
WBGene00019276
Phenotype
Homology_paralog
|
|
Phenotype |
Definition |
RNAi / Allele |
embryonic lethal
|
"Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die." [WB:cab, WB:WBPaper00000179, WB:WBPaper00004403, WB:WBPaper00004540, WB:WBPaper00004651, WB:WBPaper00004769, WB:WBPaper00005654, WB:WBPaper00024497, WB:WBPaper00024925, WB:WBPaper00025054]
|
|
maternal sterile
|
" Animals produce no or very few embryos as a result of experimental treatment. This is in contrast to sterility due to genetic perturbations (maternal effect sterility)." [WB:cab, WB:cgc5599, WB:cgc7141, WB:WBPerson557]
|
|
organism morphology variant
|
"Animals exhibit variations in the form, structure or composition of any part of their anatomy compared to control animals." [WB:cab, WB:WBPaper00004402, WB:WBPaper00004403, WB:WBPaper00004651, WB:WBPaper00005654, WB:WBPaper00006395]
|
|
Variant
|
"Animals exhibit variations compared to a given control." [WB:WBPerson557]
|
|