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Cloning and expression of nucleotide sugar or PAPS transporter genes
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Cloning and expression of nucleotide sugar or PAPS transporter genes

Authors:
Introduction Protocol References Credit lines
Category
Nucleotide sugar transporters
Protocol Name

Cloning and expression of nucleotide sugar or PAPS transporter genes

Authors
Nishihara, Shoko
Laboratory of Cell Biology, Department of Bioinformatics, Graduate School of Engineering, Soka University
KeyWords
Reagents

GATEWAY™ Cloning System (Invitrogen/Life Technologies, Carlsbad, CA)

Methods
1.

Cloning and expression of nucleotide sugar or PAPS transporter genes

1) 

 A TBLASN search of the database was performed using the amino acid sequence corresponding to the open reading frame (ORF) of the NST or PAPST gene that was expected to have the desired activity in order to obtain the cDNA sequence encoding a full-length ORF.

Comment 0
2) 

 The DNA fragment corresponding to the full-length ORF was amplified by a two-step PCR procedure.

In the first round of PCR, the SNT or PAPST cDNA was amplified from the appropriate cDNA library using the forward primer 5’-AAAAAGCAGGCT-(gene-specific sequence)-3’, and the reverse primer 5’-AGAAAGCTGGGT-(gene-specific sequence)-3’. In the second PCR step, the product from the first reaction was used as the template, and was amplified with the forward primer 5’-GGGGACAAGTTTGTACAAAAAAGCAGGCT-3’, and the reverse primer 5’-GGGGACCACTTTGTACAAGAAAGCTGGGT-3’.

Comment 0
3) 

 The amplified fragment was inserted into the pDONR™201 vector (Invitrogen/Life Technologies) by recombination to create an entry clone for use during the subsequent subcloning steps.

Comment 1
4) 

 The insert was transferred between the attR1 and attR2 sites of the yeast expression vector YEp352GAP-II-HA* to generate YEp352GAP-II-NST (or PAPST)-HA for assaying the NST or PAPST activity**.

Comment 1
5) 

 The insert was transferred between the attR1 and attR2 sites of the appropriate mammalian expression vectors* to generate the expression vector encoding HA epitope tagged or c-Myc tagged NST or PAPST for assaying NST or PAPST activity. The tags were also used to identify intracellular localization by immuno-staining using anti-HA antibody or anti-cMyc antibody**.

Comment 1
Notes

Nucleotide sugar transporters (NSTs) and PAPS transporters (PAPSTs) generally share a high level of sequence homology. Indeed, partially conserved NST and PAPST activity is observed between homologous NSTs and PAPSTs (Fig. 2). Therefore, TBLASTN search was used for gene identification.1,2,3)

Figure & Legends

Figure & Legends

Fig. 1. Schematic representation of nucleotide sugar transporters (NSTs) and glycosylation pathways.

NSTs transport nucleotide sugars from the cytosol into the lumen of the ER/Golgi compartment by coupling with the antiport of nucleoside monophosphate (NMP), which is produced as the result of a glycosyltransferase reaction and a subsequent luminal nucleoside diphosphatase (NDPase) reaction. Some NSTs transport nucleotide sugars by coupling with the antiport of another nucleotide sugar or nucleoside diphosphate4).

 

 

Fig. 2. Phylogenetic tree of nucleotide sugar transporters (NSTs) and PAPS transporters (PAPSTs).

Sugar nucleotide transporters (NSTs) and PAPS transporters (PAPSTs) with known substrates were used to generate the phylogenetic tree by ClustalX 2.0.10. [substrate: species, name of transporters].

At : Arabidopsis thaliana, Af : Aspergillus fumigatus, Ca : Candida albicans, Ce : Caenorhabditis elegans, Cg : Candida glabrata, Cn : Cryptococcus neoformans, Dm : Drosophila melanogaster, Eh : Entamoeba histolytica, Hs : Homo sapiens, Kl : Kluyveromyces lactis, Ld : Leishmania donovani, Lm : Leishmania major, Pp : Pichia pastoris, Sc : Saccharomyces cerevisiae, Sp : Saccharomyces pombe.

 

 

Table 1. Nucleotide sugar transporter family - (SLC35 family)

 

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