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Conversion of Pyridylamino Sugar Chains to Corresponding Reducing Sugar Chains
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Conversion of Pyridylamino Sugar Chains to Corresponding Reducing Sugar Chains

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Introduction Protocol References Credit lines
Category
N-Glycans
Protocol Name

Conversion of Pyridylamino Sugar Chains to Corresponding Reducing Sugar Chains

Authors
Nakakita, Shin-ichi *
Department of Functional Glycomics, Life Science Research Center, Kagawa University

Natsuka, Shunji
Department of Biology, Faculty of Science, Niigata University
*To whom correspondence should be addressed.
KeyWords
Reagents

Palladium (Wako Pure Chemical Industries, Ltd., Osaka, Japan)

Hexamethylenetetramine (Wako Pure Chemical Industries Ltd.)

Hydrazine anhydrate (Tokyo Chemical Industry Co., Ltd., Tokyo, Japan)

Instruments

Speed Vac Concentrator (Thermo Fisher Scientific Inc., Waltham, MA)

Block incubator (Astec Co., Ltd., Fukuoka, Japan)

Rotary oil pump connected to cold trap (Yamato Scientific Co., Ltd., Tokyo, Japan)

Hydrogen Generator (GL-Science, Tokyo, Japan)

Methods
1.

Preparation of 1-amino-1-deoxy derivative from pyridylamino saccharide

1) 

 Lyophilized pyridylamino saccharide (>1 nmol).

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2) 

 Put on the bottom of a test tube.

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3) 

 Add 1 mL of the 0.1% Acetic acid solution.

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4) 

 Mix well.

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5) 

 Add Palladium black (3 mg).

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6) 

 Reduce with hydrogen gas at an atmospheric pressure and at room temperature for 3 h.

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7) 

 Filtrate by Milex filter (0.22 μM).

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8) 

 Evaporate to dryness.

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9) 

 Add 0.2 mL of anhydrous hydrazine.

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10) 

 Heated in a sealed tube at 70°C for 2 min.

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11) 

 Remove excess hydrazine in vacuo.

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12) 

 Gel filtration on a Bio-Gel P-2 column (1.2 × 90 cm; 10 mM acetic acid).

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13) 

 Concentrate Ninhydrin positive fractions and lyophilized.

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2.

Conversion of 1-amino-l-deoxy derivative to reducing saccharide

1) 

 1-amino-1-deoxy derivative (about 1 nmol/ 5 μL of water) is put on the bottom of a test tube.

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2) 

 Add 8 μL of saturated hexamethylenetetramine aqueous solution.

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3) 

 Add 1.5 μL of 50% acetic acid aqueous solution (pH of the mixed reaction solution is 4.5).

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4) 

 Heat in a sealed tube at 100°C for 45 min.

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5) 

 Add 100 μL of water.

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6) 

 Concentrate to about 20 μL with a Speed Vac concentrator to remove the volatile reagents.

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7) 

 Add 200 μL of water.

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8) 

 Apply onto a TOYOPAK ODS cartridge.

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9) 

 Wash with 600 μL of water.

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10) 

 Collect eluate and washings.

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11) 

 Add 0.6 g of Dowex 50W X2 (H+).

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12) 

 Pour into a small glass column.

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13) 

 Wash with 3 column volumes of water.

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14) 

 Collect eluate and washings, and concentrated, and freeze-dried.

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Initial amount

1 μg – 1 mg

Produced amount

1 μg – 1 mg

Discussion

This method clearly indicates that 1-amino-l-deoxy sugars can be converted to the corresponding sugar chains with reducing power by the Sommlet reaction.

Figure & Legends

Figure & Legends

 

 

Fig. 1. Scheme for the conversion of a PA-sugar chain into a free sugar chain.

 

This figure was originally published in J Biochem. 134(1): 51–5 2003 " Conversion of pyridylamino sugar chains to corresponding reducing sugar chains"  Takahashi C. Nakakita S. et al. Oxford Journals.

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